SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11308

Length: 2102 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2

UniGene Fasta

>sp_v2.0_unigene11308
GTGACCATATTACTCTGTAGAGATTTCCCCCACTGTCTTACGGGTTTCAGCCCAGCCAAGCATTGGGTAGAGCAACACTTCGCAGAAGACGAAAAAGGAGATGGAGATGCAGAAGCGGAGCAGGAGTCATGTGGTGGTATTCTCGACATTGGAGCAGGGCCACCTAATCCCTGCATTCCAAACTACTCTTCATCTCGCACACAGAGGCGTCGCTGTCACCTTCGTCACAACTCCTCTCAACGCAACCGCTCTCACTTCCAGACTCCCGCCTTCACAATCTCCTTTCCTCCTGCGCTTCCATCACTTGTCGCTTCCGCCCTTTGACGGCCTCCCGCCAGACCAAGAAAGCTGCCACATCCTCCACCCAAAACAATTTCAAAACCTCTATCTCGCCACGGAACAGCTTCAACCCCAATTCGAAGACCTTCTGCAGAGCCTAGCGGTAAACGCCGACGAAGAATGGATGAAACCGACCTGTGTGATTGGCGACATGTTCACCGGATGGGTACAAGAATCCGCTATGAAGATGGGCATTCCCGGCTTCACGTTTTACACTTCCCCGGCCTACGGGACTCTGCTTTACAATTCCCTTTGGCTTCATCTGCCCCACCTCGATAACCAATCCGACACCGTTACTCTCCCCGACGTACCCACCTTCTTGACTCTGAATCGATCGGATTTGACTCCCAGCTTGCTGAAGGCCACCAGCTCTAATCCATGGCACCTGTTTGTGAGCCGACAGGTGAAGAAAAAACAGGCACACTCGGGGATACATCGTCAATACGTTCTTGGAGCTGGAACCGGAGATTATCGAATACATGGCGACAAGCAGCGGGAAGCCCGTCTGGACCGTTGGCCCCGTTTTACCCTACGATTACATCACGGGATCCTCTGCTACAACCCCTCTGGATCGAGGGGAAGCATCGATCTCGGAATGGCTGAACCAGCAAGCGCCGGGTTCTGTCGTTTATGTTTCGTTCGGGAGCAGGAATTTTCTGTCCGCTGCCCAGATTCGAGAACTCGCATTTGGGCTCCAAGGTAGCGGGAAACCCTTCATATGGGTTCTGCGTACTCCGCCGGAAAACCGTAGAACGAGAGGGGCTCCTCGCAGTCTCTGCTCCCGGAAGGATTCGAACGCGATACCTCCGGGCAAGGCCTGGTGATCACAGGATGGGCACCGCAGCTTCTCATCCTGTCTCATCCTTCCACGGGCGCTTTCATCAGCCACTGCGGCTGGAATTCCATGTTGGAAAGCGTGAGCAGAGGGATTCCCATCATCTGTTGGCCCATGGCGGGTGAGCAGTTCCTTAATGCCAAGTGGTTCGTCGAACAGCTCCGAGTTGCCGTGCGAGCACAGCGGGAAGACGGTGATGTCGTGCCAAGAGAAGAGGTGGAGAGGGTTGTGAGGGTCGTCCTGGAGGACGAAGGGGATCTGGATGTGAGAGGCAGAGTCCGAAATCTGGCTCATGTCGCCCAGGCAGCGGTGATTGATGGCGGTTCGTCTGCTAAAAACTGGGATTCCTTTGTGAAGCACATCTCTTTCCTCCAGAGTTCATCAAATGAATCCACTCGCATACATTCATCTTCACAAGAATCATGATGGATGGTAAACATTATTGACCAGGTAGAAACGTCATCTAAGGCCTGCAGGGACCGCACATACTCATCTTCATCATGCTCTCCTGGAAGTTAGAATGGATGCAGACCTTATTGACCAGGCAAACGTCATCATTGGCGGGCAGGAACTGTTTAGTGCAGAACATTAATGAAAAGGTGGAGCCATACAATTGCATGAACTCCAGAGCAGGGGTGGAATTGCAGAGAACCATAATGGAGAGACTGAATTATAGAAAATTGCCTACTTGGAGGTTATAGAAGGGTCCTACTTGGCCACCCAACCACAAATTCGAATTTCAAATTCCAACTCATGAAGATTTGTGGAATAATTGTAGAAGATGTGGATCATTAACTATGCACATTCAAAGGAGAAGAATCATGGATGAGAGGATTTGTATCTTACATTTTTAGGAGATTGGTTGTAACCACAAAAGGCCAATGTGGATTTAGGAGAGATCTAAAGATACATATTTATTGTATAATTA

Ace file of the UniGene sp_v2.0_unigene11308

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cytokinin-O-glucosyltransferase 3 n=2 Tax=Andropogoneae RepID=B4FPY0_MAIZE	-	-	34%
FL-Next	sp=UDP-glycosyltransferase 92A1; Arabidopsis thaliana (Mouse-ear cress).	-	-	28%
Blast2go	udp-glycosyltransferase 92a1-like	-	-	50%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Glycosyltransferases, Hexosyltransferases.	EC:2.4.1.-	-	0.0	50%

Source	KEGGs	Term	Identity
Blast2go	Fructose and mannose metabolism	00051	50%
Blast2go	N-Glycan biosynthesis	00510	50%
Blast2go	Mucin type O-Glycan biosynthesis	00512	50%
Blast2go	Various types of N-glycan biosynthesis	00513	50%
Blast2go	Other types of O-glycan biosynthesis	00514	50%
Blast2go	Biosynthesis of 12-, 14- and 16-membered macrolides	00522	50%
Blast2go	Glycosaminoglycan biosynthesis - keratan sulfate	00533	50%
Blast2go	Lipopolysaccharide biosynthesis	00540	50%
Blast2go	Peptidoglycan biosynthesis	00550	50%
Blast2go	Glycerolipid metabolism	00561	50%
Blast2go	Glycosylphosphatidylinositol(GPI)-anchor biosynthesis	00563	50%
Blast2go	Sphingolipid metabolism	00600	50%
Blast2go	Glycosphingolipid biosynthesis - lacto and neolacto series	00601	50%
Blast2go	Glycosphingolipid biosynthesis - globo series	00603	50%
Blast2go	Glycosphingolipid biosynthesis - ganglio series	00604	50%
Blast2go	Carotenoid biosynthesis	00906	50%
Blast2go	Zeatin biosynthesis	00908	50%
Blast2go	Flavonoid biosynthesis	00941	50%
Blast2go	Anthocyanin biosynthesis	00942	50%
Blast2go	Flavone and flavonol biosynthesis	00944	50%
Blast2go	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	50%
Blast2go	Betalain biosynthesis	00965	50%
Blast2go	Biosynthesis of type II polyketide products	01057	50%
Blast2go	Metabolic pathways	01100	50%
Blast2go	Biosynthesis of secondary metabolites	01110	50%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity, transferring hexosyl groups	GO:0016758	Molecular Function	0.0	50%

Source	InterPros	Term	Type	e value	Identity
Sma3	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9LXV0

Fln msg:

Fln protein: MEMQKRSRSHVVVFSTLEQGHLIPAFQTTLHLAHRGVAVTFVTTPLNATALTSRLPPSQSPFLLRFHHLSLPPFDGLPPDQESCHILHPKQFQNLYLATEQLQPQFEDLLQSLAVNADEEWMKPTCVIGDMFTGWVQESAMKMGIPGFTFYTSPAYGTLLYNSLWLHLPHLDNQSDTVTLPDVPTFLTLNRSDLTPSLLKATSSNPWHLFVSRQVKKKQAHSGIHRQYVLGAGTGDYRIHGDKQREARLDRWPRFTLRLHHGILCYNPSGSRGSIDLGMAEPASAGFCRLCFVREQEFSVRCPDSRTRIWAPR*RETLHMGSAYSAGKP*NERGSSQSLLPEGFERDTSGQGLVITGWAPQLLILSHPSTGAFISHCGWNSMLESVSRGIPIICWPMAGEQFLNAKWFVEQLRVAVRAQREDGDVVPREEVERVVRVVLEDEGDLDVRGRVRNLAHVAQAAVIDGGSSAKNWDSFVKHISFLQSSSNESTRIHSSSQES*

Protein Length: 501

Fln nts: GTGACCATATTACTCTGTAGAGATTTCCCCCACTGTCTTACGGGTTTCAGCCCAGCCAAGCATTGGGTAGAGCAACACTTCGCAGAAGACGAAAAAGGAG_-_ATGGAGATGCAGAAGCGGAGCAGGAGTCATGTGGTGGTATTCTCGACATTGGAGCAGGGCCACCTAATCCCTGCATTCCAAACTACTCTTCATCTCGCACACAGAGGCGTCGCTGTCACCTTCGTCACAACTCCTCTCAACGCAACCGCTCTCACTTCCAGACTCCCGCCTTCACAATCTCCTTTCCTCCTGCGCTTCCATCACTTGTCGCTTCCGCCCTTTGACGGCCTCCCGCCAGACCAAGAAAGCTGCCACATCCTCCACCCAAAACAATTTCAAAACCTCTATCTCGCCACGGAACAGCTTCAACCCCAATTCGAAGACCTTCTGCAGAGCCTAGCGGTAAACGCCGACGAAGAATGGATGAAACCGACCTGTGTGATTGGCGACATGTTCACCGGATGGGTACAAGAATCCGCTATGAAGATGGGCATTCCCGGCTTCACGTTTTACACTTCCCCGGCCTACGGGACTCTGCTTTACAATTCCCTTTGGCTTCATCTGCCCCACCTCGATAACCAATCCGACACCGTTACTCTCCCCGACGTACCCACCTTCTTGACTCTGAATCGATCGGATTTGACTCCCAGCTTGCTGAAGGCCACCAGCTCTAATCCATGGCACCTGTTTGTGAGCCGACAGGTGAAGAAAAAACAGGCACACTCGGGGATACATCGTCAATACGTTCTTGGAGCTGGAACCGGAGATTATCGAATACATGGCGACAAGCAGCGGGAAGCCCGTCTGGACCGTTGGCCCCGTTTTACCCTACGATTACATCACGGGATCCTCTGCTACAACCCCTCTGGATCGAGGGGAAGCATCGATCTCGGAATGGCTGAACCAGCAAGCGCCGGGTTCTGTCGTTTATGTTTCGTTCGGGAGCAGGAATTTTCTGTCCGCTGCCCAGATTCGAGAACTCGCATTTGGGCTCCAAGGTAGCGGGAAACCCTTCATATGGGTTCTGCGTACTCCGCCGGAAAACCGTAGAACGAGAGGGGCTCCTCGCAGTCTCTGCTCCCGGAAGGATTCGAACGCGATACCTCCGGGCAAGGCCTGGTGATCACAGGATGGGCACCGCAGCTTCTCATCCTGTCTCATCCTTCCACGGGCGCTTTCATCAGCCACTGCGGCTGGAATTCCATGTTGGAAAGCGTGAGCAGAGGGATTCCCATCATCTGTTGGCCCATGGCGGGTGAGCAGTTCCTTAATGCCAAGTGGTTCGTCGAACAGCTCCGAGTTGCCGTGCGAGCACAGCGGGAAGACGGTGATGTCGTGCCAAGAGAAGAGGTGGAGAGGGTTGTGAGGGTCGTCCTGGAGGACGAAGGGGATCTGGATGTGAGAGGCAGAGTCCGAAATCTGGCTCATGTCGCCCAGGCAGCGGTGATTGATGGCGGTTCGTCTGCTAAAAACTGGGATTCCTTTGTGAAGCACATCTCTTTCCTCCAGAGTTCATCAAATGAATCCACTCGCATACATTCATCTTCACAAGAATCATGA___TGGATGGTAAACATTATTGACCAGGTAGAAACGTCATCTAAGGCCTGCAGGGACCGCACATACTCATCTTCATCATGCTCTCCTGGAAGTTAGAATGGATGCAGACCTTATTGACCAGGCAAACGTCATCATTGGCGGGCAGGAACTGTTTAGTGCAGAACATTAATGAAAAGGTGGAGCCATACAATTGCATGAACTCCAGAGCAGGGGTGGAATTGCAGAGAACCATAATGGAGAGACTGAATTATAGAAAATTGCCTACTTGGAGGTTATAGAAGGGTCCTACTTGGCCACCCAACCACAAATTCGAATTTCAAATTCCAACTCATGAAGATTTGTGGAATAATTGTAGAAGATGTGGATCATTAACTATGCACATTCAAAGGAGAAGAATCATGGATGAGAGGATTTGTATCTTACATTTTTAGGAGATTGGTTGTAACCACAAAAGGCCAATGTGGATTTAGGAGAGATCTAAAGATACATATTTATTGTATAATTA

Fln Alignment:

Contig11308___MEMQKRSRSHVVVFSTLEQGHLIPAFQTTLHLAH-------RGVAVTFVTTPLNATALTSRLPPSQSPFLLRFHHLSLPPFD----GLPPDQESCHILHPKQFQNLYLATEQLQPQFEDLLQSLAVNADEEWMKPTCVIGDMFTGWVQESAMKMGIPGFTFYTSPAYGTLLYNSLWLHLPHLDNQSDTVTLPDVPTFLTLNRSDLTPSLLKATSSNPWHLFVSR
Q9LXV0_______________MAEAKPRNLRIVMFPFMGQGHIIPFVALALRLEKIMIMNRANKTTISMINTPSNIPKIRSNLPPESSISLIEL------PFNSSDHGLPHDGENFDSLPYSLVISLLEASRSLREPFRDFMTKIL---KEEGQSSVIVIGDFFLGWIGKVCKEVGVYSVIFSASGAFGLGCYRSIWLNLPHKETKQDQFLLDDFPEAGEIEKTQLNSFMLEADGTDDWSVFMKK

SNPs (tot: 60)

Position	A %	C %	G %	T %	Probability
69	80		20		0.995493
212		76	23		1.0
214		82		17	1.0
215		17		82	1.0
218		82	17		1.0
224		88	11		0.999952
227		88	11		0.999952
228	88			11	0.999952
269		33	66		1.0
569	12	87			0.992554
593		83		16	0.994512
610	83			16	0.994512
611		80		20	0.995493
612		80	20		0.995493
613			20	80	0.995493
618	75		25		0.996473
622	75			25	0.996473
623	75		25		0.996473
624		25	25	50	0.995533
626		75		25	0.996473
628	75			25	0.996473
630	75			25	0.996473
631		75		25	0.996473
633	25		75		0.996473
634		25		75	0.996473
657			33	66	0.997452
660			33	66	0.997452
665		33		66	0.997452
666		66		33	0.997452
669	66		33		0.997452
670	66	33			0.997452
672		66	33		0.997452
673			66	33	0.997452
674	66	33			0.997452
675	33			66	0.997452
677			66	33	0.997452
678		33	66		0.997452
832	33		66		0.997452
860		80		20	0.995493
869		80		20	0.995493
882	80		20		0.995493
884	20		80		0.995493
890		80		20	0.995493
895		80		20	0.995493
968		25		75	0.996473
1282	33	66			0.997452
1285			33	66	0.997452
1286			33	66	0.997452
1398			25	75	0.996473
1436			80	20	0.995493
1437		20	80		0.995493
1438	20		80		0.995493
1459	83	16			0.994512
1463		83		16	0.994512
1466	83	16			0.994512
1467	83	16			0.994512
1471			16	16	0.988813
1473		16	83		0.994512
1474	16		83		0.994512
1788			66	33	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain