SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11292

Length: 1883 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene11292 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative CCAAT-binding transcription factor [Oryza sativa Japonica Group]	-	-	9.0e-29	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Blast2go	nuclear transcription factor y subunit a-9-like	-	-	0.0	61%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	61%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	61%
Blast2go	DNA binding	GO:0003677	Molecular Function	61%
Blast2go	CCAAT-binding factor complex	GO:0016602	Cellular Component	61%

Source	InterPros	Term	Type	Identity
Sma3	CCAAT-binding transcription factor, subunit B	IPR001289	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	CCAAT-binding factor, conserved site	IPR018362	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PQJ9

Fln msg: Separated hits, possible frame ERROR between 873 and 915,

Fln protein: MMSITMQAPPEYGVQGGHVGQPALPSASPWWPGIGSSFDQLKTMDHSAPVRQLGIQLQQSSAMLQSQPVEGPAQLLTTTMPRVTTHSGYDKGNGVEPQHQISSKTINCSAPSDCFVPQSQQEIDHSIARATYPYAEPYFGGIFATYGPQAMIHPHMLGVQQARMPLRIETEEEPVYVNAKQYHGILRRRQLxxxxxxxxxxxxxxxPYLHESRHLHAMRRARGCGGRFLNTKKLDPSKVNTDNGKGSEGAPVRAGSSSGSEGFQSQDGNPRILQEVQGTTSRMSSLKVTNMEKSYTDGKSYLHPRNNGVYHSGRLQQHFHVSAFHHISSGGDKGEGGDARVLVSNGSQQRAVEIL*

Protein Length: 357

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTGATTTTTTTATCTGGTTTGTTTGGCCTTTTGCAGTGGCTCTAAGATCATAGCGCGCTCTGACTTGACCCTGTTTCCCATTCTGATTCTCATTCGTGGAGAGGTGAAGAACCCAATAACATCACGCCCCGCCCTGCCTCTGGTTTCGAAATCGAGTTCCCTCTATCAGGTCGCGAAGGCAGAACATCATCTTCATTCGGCGAAATGTAGAAAGAAGGTTGCGATCATACCAGTGAACAGCAGCCAGCTTGCGAAGAAGGATTTGCAGAGAGA_-_ATGATGAGTATCACCATGCAAGCTCCGCCAGAGTATGGAGTTCAGGGCGGGCATGTTGGGCAGCCTGCCCTGCCTTCTGCGAGTCCGTGGTGGCCTGGAATTGGGTCATCCTTCGATCAGTTGAAGACGATGGACCACTCGGCTCCTGTGAGACAATTGGGTATTCAACTTCAGCAGTCTTCTGCAATGCTCCAATCTCAACCAGTTGAAGGTCCAGCGCAATTGTTAACTACGACTATGCCACGCGTAACAACTCATTCTGGTTACGATAAGGGTAATGGAGTTGAACCACAACATCAAATATCGTCAAAAACAATTAATTGTTCTGCTCCGTCAGATTGCTTTGTGCCACAGAGTCAACAAGAAATTGATCATTCAATTGCTCGTGCTACTTACCCTTATGCGGAGCCCTATTTTGGAGGTATTTTCGCTACTTATGGACCTCAGGCTATGATTCATCCCCATATGCTTGGAGTGCAACAGGCTCGTATGCCCTTACGAATAGAAACAGAAGAAGAACCTGTATATGTAAATGCAAAACAATACCATGGGATCTTGCGACGCAGACAATTACGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCCATATCTGCATGAATCTCGACATCTTCACGCTATGCGAAGAGCAAGGGGTTGTGGGGGTCGTTTTCTCAACACAAAGAAGTTAGACCCATCAAAAGTGAATACTGATAATGGAAAGGGATCAGAGGGAGCTCCAGTACGGGCTGGAAGTTCTTCAGGTTCTGAAGGATTTCAGTCACAAGATGGAAATCCAAGAATTTTACAGGAGGTACAAGGTACTACTTCAAGAATGTCAAGCTTAAAAGTTACCAACATGGAAAAATCATACACCGATGGAAAAAGCTACCTTCACCCTCGTAACAATGGTGTATATCACAGTGGACGCCTGCAGCAACATTTCCATGTGTCTGCTTTCCATCATATTTCTAGTGGAGGTGATAAGGGAGAGGGTGGAGATGCAAGGGTCCTTGTATCAAATGGATCTCAGCAGAGGGCTGTTGAGATCCTGTGA___AAAGTAGTTTATACAAAGTCTTTGTATGGTCTCTCATATGCTTAGGTTCTTTGTTTCATTCTCAATTCTGAAAATTAGACTGGGTCAAACTGCTCCTATTTCAGGAGAATGGAACAGGGGACTAGGAAGATGCTGGCCTAATGTTTGCAATGTTCTTATTTCAGAAATCCATTCAGGTTATCTTGCTTGGTTTCCCTTCAAAGTTGGTGATGGTTTCGAATTATCATTGCATCTATGGTCTGCAACTTCTCTGCGTTTGGGAGACTTATAATGGAAGTAGCCAGATGGAAGAGCCTGTTGCATTAGGACATGTTTCTGTGATGTGTATACAACGATCACAGCTCAACAGTGTCCGACAATGCTTCAGGGTTGGTTGAGAAATTGACCTTATGCATCTGATACTTTCCAAGGCAATTCATTCTTGGCTGTTTGTGTATTTTCTCGTAGACTTCTGATCAGGTCATGATATGATTAGAAGCTCTTTTGTTCTGAACATTGCACATGTAAATTATCACGTCC

Fln Alignment:

Contig11292___GQPALPSA---SPWWPGIGSSFDQ------LKT--MDHSAPV----RQLGIXXXXXXXXXXXQPV----EGPAQLL-TTTMPRVTTHSGYDKGNGVEPQHQISSKTINCSAPSDCFVPQSQQEIDHSIARATYPYAEPYFGGIFATYGPQAMIHPHMLGVQQARMPLRIE-TEEEPVYVNAKQYHGILRRRQLRxxxxxxxxxxxxxxPYLHESRHLHAMRRARGCGGRFLNTKKLDPSKVNTDNGKGSEGAPVRAXXXXXXXXXXXXXGNPRILQEVQGTTSRMSSLKVTNMEKSYTDGKSYLHPRNNGVYHSGRLQQHFHVSAFHHISSGGDKGEGGDARVLVSNGSQQRAVEI
C0PQJ9_______________GQPNLSSAVPGMPWWNGFGTQFPQSAWCAPVKSLFMDHPSRVPGAIKQVASQSQQLEQPSTQVAVQSQSEGEAVLAGTTRMQSMSNQSGYSGANGEKQHQHQSTKSIIASAPTEYLVPHAQLEFNHSIACAAYPYAEPYFGGILAAYPAQAMIHPNMLGVQQARMPLPLDMTEEEPVYVNAKQYHGILRRRQLRxxxxxxxxxxxxxxPYLHESRHLHAMKRARGCGGRFLNTKKLEDLKANMDNGKTSEGHPAQAGSSSGSEVLQSENGNGNSTQEVHGACG-LSGSEVTSIAQSSENGTTYQYAHTNGTYLNHYQHQHFHISAFHPLSSGGEEGSSAKSGSILSGGSQQRVVVI

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1740	33	66			0.997452
1741	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain