SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11287

Length: 2090 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene11287
CGTCGTGACCTTGGCTGTCACTGAACTTGTGTTCCGTTCCAGTTCCCAATTCTCCCATCTCTCTTTCTGATTCATCTCCCACCAATTTCTAGAACCACGAATGACTTGACGCAAAAGAATCGCATATTCAGAAGAATCATCACCACTCACGTTTCTCTGCATGCATTTTGGGGATCGTTTTTCCACGGTAAGGTCTCATGGGGTTCGGAGCATGTGACAGCTTCAATATCCCCCCAGCCAAGAATCGAAACCTGCGGCCGTATTTAATTTCGCAGAAATCTGCTAATTACGCGGTTTCTGAAGATGGGTAGTGGTCAGGGGCACACTTTAAATACGCCAGCAGCTCCCGTGGATCGCTCGAGGCCTGGTGTAATGCCGGGAGAGAAAGGAAGGAGTGGAGAAGATGGGTTGTCATTGGTGGGCATACCCCTCTACGCCAAGGAGCTCATCGCTGGAGGCGTGGCGGGCGGTATTGCCAAGACGGCCGTGGCGCCCTTGGAGCGCATCAAGATATTGTTTCAAACAAGGCGCGCAGAATTTCGGTCGTTAGGTGTGTGGGGATCTTTTGGAAGGATATTTCGGACCGAAGGTGTGCGGGGCCTTTACAGAGGAAATGGAGCTAGTGTTGCTAGAATTGTTCCTTATGCAGCTTTGCATTACATGGCATATGAGGAATATCGACGGCGGATTTTACACCATTATCCTGGTTTTGGGACTGGTTCGATGGTTGATCTCGTAGCAGGCTCTTTAGCAGGAGGAACAGCAGTTATATGCACTTATCCTTTGGACCTAGTTCGGACCATGCTTGCTTATCAGGTGACTGGTTCATATACCACAGAGTCAGATAAGGGTGCAAGGCGTGTTTGTATCCAGCCAGCTTACAGGGGTATACTGGATGTGTTTGCAAAGGTTTATAGGGAGGGTGGCTTACGTGGCCTTTACCGTGGAGTAGGTCCGTCACTTTATGGAATTTTTCCATAGTGACCTGGCCTGAAGTTTTATGTCTACGAGGAGTTGAAGAGACGTGTTCCAAAGAAGCATGAACATTCTATGACAGCAAACCTTGTTTGTGGATCTTTGGCTGGTTTGGTGGGTCAAACCTGCACGTATCCTCTGGATGTTGTTAGACGACAAATGCAGGTACAGACATTATCAGCTAACCAAAATAGTGCATCTTCTCTTCAACAAATGGAACCCAAGTTCAAAGGAACATTGGACGGTCTTGTTACCATTGTTCAAAGACAAGGCTGGAAGCAGATGTTTTCTGGGCTAAGTATTAATTACGTAAAGGTTGTACCTTCAGTGGCAATTGGCTTTACTACATACGATGCAATGAAATCCCTGCTTGGAGTTCCATCTCGAGAAAGAGGGAGTTCCATCTCGAGAAAGAGCACATAGTGGAAAATATGGTTGAGAGAGACAATGCCGGGTATGGTTGCATTTTGTTGCCTCGAAAGTTTTATGCATATGTGATGGCTTATCTGATCTCATTCAAGATCAAGAATTGGGTGCGGGGGCTTCTGGAGGAGCTCTCATTCAAGCTCAAGAAATTGGGTGGAGGAGCTTTCATTCAAGATCGAGAAGTTGGGTGGAGGGTCTGTAGGTGGAGCGTGTGTTGAAAACTATAATTAAGGATCCAGTTGAAGCAACTTGTGACCATTCAGTGCTACCCGCTTGACTTGTTTTAATTTATTCACTTTGCACTAAGTTTTGATTATTGTTCACTTGCAAGCAGCAACTATTTCATTTGTAACATTAAAAATGAATTTTGATTATTGTTACTTGCAACCAGCAGATTTTTTCAGTTGTAACCTTCAAAATGCCCTTAAAAGGGTATTTCTATACAATTTAAAAAGGGTTGAAGCCCAAATGTTTAATATTAGGTGAACAGGCGGGCCACTGCGTAGCGCGTCTAAATTGTGCCCTTGTTATTGTAATTGTGGAGCTTCAAAATTGATGAACCTCCATAAATAGATTTGGCCAGGATGCAAATTTATTTCAGACTTTTTTTAGAAGAAGCTGTATAGTGGATTAAGAGACGAATCAGAATTTGAAAAGTTTAAAATCCCGAAAAATATTATTGAATTTTG

Ace file of the UniGene sp_v2.0_unigene11287

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Grave disease carrier protein, putative n=1 Tax=Ricinus communis RepID=B9RKA8_RICCO	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	37%
Blast2go	grave disease carrier	-	-	72%

Source	GOs	Term	Type	Identity
Blast2go	mitochondrial transport	GO:0006839	Biological Process	72%
Blast2go	binding	GO:0005488	Molecular Function	72%
Blast2go	transporter activity	GO:0005215	Molecular Function	72%
Blast2go	mitochondrial inner membrane	GO:0005743	Cellular Component	72%

Source	InterPros	Term	Type	Identity
Sma3		IPR001993	-	-
Sma3	Mitochondrial carrier protein	IPR002067	-	-
Sma3	Adenine nucleotide translocator 1	IPR002113	-	-
Sma3	Mitochondrial substrate/solute carrier	IPR018108	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADX1

Fln msg:

Fln protein: MGSGQGHTLNTPAAPVDRSRPGVMPGEKGRSGEDGLSLVGIPLYAKELIAGGVAGGIAKTAVAPLERIKILFQTRRAEFRSLGVWGSFGRIFRTEGVRGLYRGNGASVARIVPYAALHYMAYEEYRRRILHHYPGFGTGSMVDLVAGSLAGGTAVICTYPLDLVRTMLAYQVTGSYTTESDKGARRVCIQPAYRGILDVFAKVYREGGLRGLYRGVGPSLYGIFP**PGLKFYVYEELKRRVPKKHEHSMTANLVCGSLAGLVGQTCTYPLDVVRRQMQVQTLSANQNSASSLQQMEPKFKGTLDGLVTIVQRQGWKQMFSGLSINYVKVVPSVAIGFTTYDAMKSLLGVPSRERGSSISRKST*

Protein Length: 366

Fln nts: CGTCGTGACCTTGGCTGTCACTGAACTTGTGTTCCGTTCCAGTTCCCAATTCTCCCATCTCTCTTTCTGATTCATCTCCCACCAATTTCTAGAACCACGAATGACTTGACGCAAAAGAATCGCATATTCAGAAGAATCATCACCACTCACGTTTCTCTGCATGCATTTTGGGGATCGTTTTTCCACGGTAAGGTCTCATGGGGTTCGGAGCATGTGACAGCTTCAATATCCCCCCAGCCAAGAATCGAAACCTGCGGCCGTATTTAATTTCGCAGAAATCTGCTAATTACGCGGTTTCTGAAG_-_ATGGGTAGTGGTCAGGGGCACACTTTAAATACGCCAGCAGCTCCCGTGGATCGCTCGAGGCCTGGTGTAATGCCGGGAGAGAAAGGAAGGAGTGGAGAAGATGGGTTGTCATTGGTGGGCATACCCCTCTACGCCAAGGAGCTCATCGCTGGAGGCGTGGCGGGCGGTATTGCCAAGACGGCCGTGGCGCCCTTGGAGCGCATCAAGATATTGTTTCAAACAAGGCGCGCAGAATTTCGGTCGTTAGGTGTGTGGGGATCTTTTGGAAGGATATTTCGGACCGAAGGTGTGCGGGGCCTTTACAGAGGAAATGGAGCTAGTGTTGCTAGAATTGTTCCTTATGCAGCTTTGCATTACATGGCATATGAGGAATATCGACGGCGGATTTTACACCATTATCCTGGTTTTGGGACTGGTTCGATGGTTGATCTCGTAGCAGGCTCTTTAGCAGGAGGAACAGCAGTTATATGCACTTATCCTTTGGACCTAGTTCGGACCATGCTTGCTTATCAGGTGACTGGTTCATATACCACAGAGTCAGATAAGGGTGCAAGGCGTGTTTGTATCCAGCCAGCTTACAGGGGTATACTGGATGTGTTTGCAAAGGTTTATAGGGAGGGTGGCTTACGTGGCCTTTACCGTGGAGTAGGTCCGTCACTTTATGGAATTTTTCCATAGTGACCTGGCCTGAAGTTTTATGTCTACGAGGAGTTGAAGAGACGTGTTCCAAAGAAGCATGAACATTCTATGACAGCAAACCTTGTTTGTGGATCTTTGGCTGGTTTGGTGGGTCAAACCTGCACGTATCCTCTGGATGTTGTTAGACGACAAATGCAGGTACAGACATTATCAGCTAACCAAAATAGTGCATCTTCTCTTCAACAAATGGAACCCAAGTTCAAAGGAACATTGGACGGTCTTGTTACCATTGTTCAAAGACAAGGCTGGAAGCAGATGTTTTCTGGGCTAAGTATTAATTACGTAAAGGTTGTACCTTCAGTGGCAATTGGCTTTACTACATACGATGCAATGAAATCCCTGCTTGGAGTTCCATCTCGAGAAAGAGGGAGTTCCATCTCGAGAAAGAGCACATAG___TGGAAAATATGGTTGAGAGAGACAATGCCGGGTATGGTTGCATTTTGTTGCCTCGAAAGTTTTATGCATATGTGATGGCTTATCTGATCTCATTCAAGATCAAGAATTGGGTGCGGGGGCTTCTGGAGGAGCTCTCATTCAAGCTCAAGAAATTGGGTGGAGGAGCTTTCATTCAAGATCGAGAAGTTGGGTGGAGGGTCTGTAGGTGGAGCGTGTGTTGAAAACTATAATTAAGGATCCAGTTGAAGCAACTTGTGACCATTCAGTGCTACCCGCTTGACTTGTTTTAATTTATTCACTTTGCACTAAGTTTTGATTATTGTTCACTTGCAAGCAGCAACTATTTCATTTGTAACATTAAAAATGAATTTTGATTATTGTTACTTGCAACCAGCAGATTTTTTCAGTTGTAACCTTCAAAATGCCCTTAAAAGGGTATTTCTATACAATTTAAAAAGGGTTGAAGCCCAAATGTTTAATATTAGGTGAACAGGCGGGCCACTGCGTAGCGCGTCTAAATTGTGCCCTTGTTATTGTAATTGTGGAGCTTCAAAATTGATGAACCTCCATAAATAGATTTGGCCAGGATGCAAATTTATTTCAGACTTTTTTTAGAAGAAGCTGTATAGTGGATTAAGAGACGAATCAGAATTTGAAAAGTTTAAAATCCCGAAAAATATTATTGAATTTTG

Fln Alignment:

Contig11287___EKGRSGEDGLSLVG--IPLYAKELIAGGVAGGIAKTAVAPLERIKILFQTRRAEFRSL-GVWGSFGRIFRTEGVRGLYRGNGASVARIVPYAALHYMAYEEYRRRILHHYPGFGTGS-------MVDLVAGSLAGGTAVICTYPLDLVRTMLAYQVTGSYTTESDKGARRVCIQPAYRGILDVFAKXXXXXXXXXXXXXXXPSLYGIFP**PGLKFYVYEELKRRVPKK--------HEHSMTANLVCGSLAGLVGQTCTYPLDVVRRQMQVXXXXXXXXXXXXXXXMEP--KFKGTLDGLVTIVQRQGWKQMFSGLSINYVKVVPSVAIGFTTYDAMKSLLGVPSR
D5ADX1_______________EEAKLASEGVKAPGHAVLTICKSLFAGGVAGGVSRSAVAPLERLKILLQVQNPLHRKYNGTIQGLRYIWNTEGLRGLFKGNGTNCARIVPNSAVKFYSYEQASRAILWFYRQ-QTGNEDAELTPVLRLGAGACAGIIAMSATYPMDMVRGRLTVQTENS--------------PYQYRGMFHALSTVLREEGPRALYKGWFPSVIGVVP-YVGLNFAVYESLKDWLVKSRPFGLVEGEDLSMVTKLACGAAAGTVGQTVAYPLDVIRRRMQMVGWKDASSIVTGDGRSKAPLQYSGMVDAFRQTVRNEGFGALYRGLVPNSVKVVPSIAIAFVTYEALRDLLNVELR

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
24		33	66		0.997452
543		25		75	0.996473
677	75	25			0.996473
678	75		25		0.996473
680	75	25			0.996473
681			25	75	0.996473
682		75		25	0.996473
686		25	75		0.996473
687			75	25	0.996473
688		75		25	0.996473
692	75	25			0.996473
694			25	75	0.996473
696		25		75	0.996473
699	25	25	50		0.995533
700	50	25		25	0.995533
701	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain