SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11280

Length: 826 nt

Origin of reads: Biogeco2 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene11280

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Probable G2/mitotic-specific cyclin (Fragment) n=1 Tax=Picea mariana RepID=O65064_PICMA	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	61%
Blast2go	cyclin b	-	-	74%

Source	GOs	Term	Type	Identity
Blast2go	regulation of cell cycle	GO:0051726	Biological Process	74%
Blast2go	response to gamma radiation	GO:0010332	Biological Process	74%
Blast2go	cell division	GO:0051301	Biological Process	74%
Blast2go	cyclin-dependent protein kinase regulator activity	GO:0016538	Molecular Function	74%
Blast2go	cytoplasm	GO:0005737	Cellular Component	74%
Blast2go	nucleus	GO:0005634	Cellular Component	74%

Source	InterPros	Term	Type	Identity
Sma3		IPR006670	-	-
Sma3	Cyclin A/B/D/E	IPR014400	-	-
Sma3	Cyclin, C-terminal	IPR004367	-	-
Sma3	Cyclin, N-terminal	IPR006671	-	-
Sma3	Cyclin-like	IPR013763	-	-

Full-Lengther Next Prediction

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
603	40			60	1.0
635			33	66	0.997452
663	66		33		0.997452
715	33		66		0.997452
726	33			66	0.997452
739	33		66		0.997452
741		66		33	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
395	408	TGC TGC TGC TGC TG	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain