SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11263

Length: 993 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene11263

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	SMC-like protein [Arabidopsis thaliana] gb\|AAD54770.1\|AF120933_1 SMC-like protein [Arabidopsis thaliana]	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	81%
Blast2go	structural maintenance of chromosomes protein 6-like	-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	sister chromatid cohesion	GO:0007062	Biological Process	84%
Blast2go	double-strand break repair via homologous recombination	GO:0000724	Biological Process	84%
Blast2go	response to X-ray	GO:0010165	Biological Process	84%
Blast2go	two-component sensor activity	GO:0000155	Molecular Function	84%
Blast2go	ATP binding	GO:0005524	Molecular Function	84%
Blast2go	chromosome	GO:0005694	Cellular Component	84%
Blast2go	nucleus	GO:0005634	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Sma3	RecF/RecN/SMC	IPR003395	-	-
Sma3	Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain	IPR003661	-	-
Sma3	Adenosine/AMP deaminase active site	IPR006650	-	-

Full-Lengther Next Prediction

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
165	14	85			0.993533
236		85		14	0.993533
263		83		16	0.994512
264	83			16	0.994512
541	25		75		0.996473
624	25			75	0.996473
626	25	75			0.996473
861		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain