SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11250

Length: 624 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene11250

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Sorting nexin-4, putative n=1 Tax=Ricinus communis RepID=B9RRH9_RICCO	-	-	7.0e-25	61%
FL-Next	tr=Putative uncharacterized protein T28J14_60; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	61%
Blast2go	sorting nexin-1	-	-	7.4272e-30	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	vesicle-mediated transport	GO:0016192	Biological Process	7.4272e-30	76%
Blast2go	protein maturation	GO:0051604	Biological Process	7.4272e-30	76%
Blast2go	cell communication	GO:0007154	Biological Process	7.4272e-30	76%
Blast2go	phosphatidylinositol binding	GO:0035091	Molecular Function	7.4272e-30	76%
Blast2go	protein self-association	GO:0043621	Molecular Function	7.4272e-30	76%
Blast2go	protein heterodimerization activity	GO:0046982	Molecular Function	7.4272e-30	76%
Blast2go	multivesicular body membrane	GO:0032585	Cellular Component	7.4272e-30	76%
Blast2go	cytosol	GO:0005829	Cellular Component	7.4272e-30	76%
Blast2go	intracellular signal transduction	GO:0035556	Biological Process	7.4272e-30	76%
Blast2go	seedling development	GO:0090351	Biological Process	7.4272e-30	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	Phox homologous domain	IPR001683	-	0.0	-
Sma3	Vps5 C-terminal	IPR015404	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
592	12			87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain