SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11245

Length: 1303 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene11245 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[U] COG5073 Vacuolar import and degradation protein	-	-	2.0e-15	32%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Blast2go	uncharacterized protein c17orf39 homolog	-	-	0.0	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	Vacuolar import/degradation protein Vid24	IPR018618	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNZ9

Fln msg: your sequence is shorter than subject: 216 - 258

Fln protein: MPVRMVDNPFYNTQLSGTIPGHALPPPCMLLSVGQAFAGTQNVSNSQKDEAWKVNVRLQGCDLEHGYLCGSMEALNVPSAETPVVTFWEGEIVDNRNYTFLTGKWEATKEIDVRHWSKFQCFAPLLNQVELDGGRSVDLSNYPYIFMRWKEKFFVNVGTDCGLTIAGFYYVCFSRSDGSVNGFYYDPNSSPFQKLELKATNEGRAGYSFASYEFQ*

Protein Length: 217

Fln nts: CACAACCATACCGTCGTGAGCTTTGTTTTTGTTCGGGTAGGCAAGATCCTTTGATTCATCTTAATATGCACTATTCATCTTCATTGTTCTTTGTAGATTATATAATTATGTGCAGACTGGAAGGATATCACTAGCGAAGCCGATCACATAGACTCCAGTAGCTGCTGAAGACCATAGCTGACTTCAAAAACATATCACGGCTGGGCTTAAAGCCCATTCTCCAAG_-_ATGCCAGTCAGAATGGTGGATAACCCCTTCTACAACACACAATTATCGGGTACAATTCCTGGACATGCACTTCCTCCTCCTTGTATGCTGTTGAGTGTGGGTCAAGCGTTTGCTGGTACACAGAATGTATCGAATTCACAAAAGGATGAAGCTTGGAAGGTGAATGTACGTCTTCAAGGTTGTGATCTGGAACATGGGTATCTATGTGGCAGCATGGAAGCTCTTAATGTGCCTTCGGCAGAGACACCTGTCGTGACATTTTGGGAGGGTGAAATTGTTGATAACAGGAACTATACATTTTTAACTGGAAAGTGGGAGGCAACGAAAGAGATAGATGTGAGACATTGGTCAAAGTTTCAATGCTTTGCTCCACTTCTTAATCAAGTGGAGCTAGATGGAGGCAGATCAGTGGACCTGAGTAATTATCCCTATATTTTCATGAGATGGAAAGAGAAGTTCTTTGTCAATGTTGGGACAGACTGTGGTTTGACCATTGCAGGATTTTACTATGTGTGTTTTTCTCGTAGTGATGGTTCAGTAAATGGTTTTTACTACGACCCAAACAGCAGTCCATTTCAAAAGTTGGAGCTGAAGGCAACAAATGAAGGCCGTGCTGGTTACAGTTTTGCTTCATATGAGTTTCAGTGA___AAAGATGTCTAATGTCATTGATTCTTAGAGACGATGATGGGTACACAACATCGTGTTGTCAAATAGAAAACATGGCTGTCAATTATATTTTGTTAATTAATAAAGTACCAACTTCAACCTGTTTGCCTATTCGCAAACAAGAAGACCTTATACATACTGGACCAAAAATATATTATACCATGGCTTCTGGGCTATTTTCTTCCAGTCAATGCATTTATCCATTGAAGGGTCTTTCTGTAGGAGTTATTGTGCATGCTTGAAACTTGAAGGATGCTAACACGAGTTTCCTTCTCACAGCCCATGTAAAATTTGATAGTGCTAGTCACCAGGAAGTGAAAGTTATTGTCAATTTTGGCAGGCTGTTTTCCAAAGTTATGTGATGCATTTAATGCGAATTTAAATTGTGATTCTATGCATCACCTAGTTTGGG

Fln Alignment:

Contig11245___MPVRMVDNPFYNTQLSG-------------------------------------------TIPGHALPPPCMLLSVGQAFAGTQNVSNSQKDEAWKVNVRLQGCDLEHGYLCGSMEALNVPSAETPVVTFWEGEIVDNRNYTFLTGKWEATKEIDVRHWSKFQCFAPLLNQVELDGGRSVDLSNYPYIFMRWKEKFFVNVGTDCGLTIAGFYYVCFSRSDGSVNGFYYDPNSSPFQKLELKATNEGRAGYSFASYEFQ
A9NNZ9_______________MPVRMVDNPFYNTQLSGHYRPCVRKTRANIVVTQISNVGVERVNTMLEELDQGLPHQLPCTIPGHSLPPPCMLLSVGQAFAGTQNVSNSQKDEAWKVNVRLQGCDLEHGYLCGSMEALNVPSAETPVVTFWEGEIVDNRNYTFLTGKWEAMKDTDVRHWSKFQCFAPLLNQVELDGGRSVDLSNYPYIFMRWKEKFFVNVGTDCGLTIAGFYYVCFSRSDGSVSGFYYDPNSSPFQKLELKATNEGRAGYSFASYEFQ

SNPs (tot: 90)

Position	A %	C %	G %	T %	Probability
334	40	60			1.0
341	20	80			0.999996
356			80	20	0.999996
357		90	10		0.90298
358	20	80			0.999996
359	80			20	0.999996
360			20	80	0.999996
362		10		90	0.90298
363	10			90	0.90298
364			10	90	0.90298
365		20		80	0.999996
366		90		10	0.90298
367	20			80	0.999996
368	90			10	0.90298
369			10	90	0.90298
373	90			10	0.90298
376	90	10			0.90298
377		90	10		0.90298
384	11			88	0.923564
387			11	88	0.923564
392	11	88			0.923564
395	11			88	0.923564
424	83		16		0.994512
591		90	10		0.90298
594	90		10		0.90298
598	10	90			0.90298
599	90		10		0.90298
602		90	10		0.90298
605	10			90	0.90298
606		90	10		0.90298
610	87		12		0.992554
613			12	87	0.992554
615		12	87		0.992554
618	87		12		0.992554
620	87	12			0.992554
627		33		66	1.0
814		16		83	0.994512
966	81		18		1.0
1104	43		56		1.0
1105		56		43	1.0
1171		50		50	1.0
1173	87	12			1.0
1174	4	8	87		0.999414
1175		8		91	0.999766
1176		8	91		0.999807
1212	6	33			1.0
1214	64	21		14	1.0
1215	64	21	14		1.0
1217			78	21	1.0
1218	81		18		0.999994
1222	72		18		0.999994
1223		18		81	0.999994
1224		18	81		0.999994
1228	72		18		0.999994
1230		18	81		0.999994
1232	81	18			0.999994
1233		9	18	72	0.999994
1236		11		88	0.923564
1237		11	88		0.923564
1238	11	88			0.923564
1240			11	88	0.923564
1241	88		11		0.923564
1243		11		88	0.923564
1245	88	11			0.923564
1248	11			22	0.999999
1249		11		88	0.923564
1252	71		28		1.0
1254		71	28		1.0
1256	71	28			1.0
1260		28	71		1.0
1262	28			71	1.0
1263		71	28		1.0
1264			28	71	1.0
1266		28	71		1.0
1267	33	66			1.0
1269			28	71	1.0
1273		40	60		1.0
1274		33		66	1.0
1276	33			66	1.0
1277	33		66		1.0
1278		33		66	1.0
1279	50		50		1.0
1280	33		66		1.0
1281	33	66			1.0
1282	33		66		1.0
1283	33		66		1.0
1285	50	50			1.0
1286	50			50	1.0
1287	33		66		1.0
1295	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain