SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11203

Length: 2739 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene11203
CGTCGTGACCTTGGCTGTCACTCAACCTCATATGGCCGTGGTGCTCATTGTAGGGTTTGAATTTTGACAGTTGTCGCCATTTGTTATTTCCATTTGAGAGCAGGGTTGTTTTATCAGTGGTATTTTGTGTTTGCGCAGAACAGAAGGTTTGAAGATAAGGATACTGTAATTTGGCTGAAGGCTTTCGAGCCTTCGTAGCGGTGTTGAAAGCTTACAGGGGTTTGATAATTTTACCAGACATTTGACGCGTTGGTAATTATATAGGGTTCGCATTTTGCCGGGTCTGATAGATTCGGTCGTTATTCTTTTTATTGTGACTTGAAGCTCACGAGGGTTGATTGTGAACTTCAATACATTTTACCCAATTTGAGCGTTTAAGGGTGTGAAGCCTACAGGGTTTAATATTCTGTGGTCTGGTTGAGTCATTGGGTGTTTGCATCTCAAAGGGTTTGGTGTTTTAGGCCTTTTGAGCTTTCAGGGTTTGAACATTTCAGGTCTCGATAATTTCCGTTGCTGAAAGCTCCGAGTTTGAAGCTTGGGTAGAATGGGTTCCATAGCTGGCCAGCCGCAGTTCCGGTACACTCAACCACCATCGAAGGTTCTGCACCTTAGAAATTTGCCGTGGGAGTGCACAGAGGAAGAGCTTATTGAACTGGGGAAGCCGTTCGGGAAAATTGTCAACACCAAGGTTAATGTTGGATCGAATCGCAACCAGGCGTTTGTGGAATTTGCGGATTTGAATCAAGCTATTGCAATGGTTTCATATTATGCTTCATCGCCAGAACAGGCTCAGGTACGCGGCAAAACTGTGTACCTACAATACTCCAATACGCATGAAATCGTCAACAGCAAGAATTCCGGGGATGAAGCAAGCAATGTATTGCTGGTGACAATTGAGGGTGTAGAAGCTGGTGATGTCAGCATAGATGTTCTGCATTTGGTATTCTCAGCATTTGGTTTTGTACATAAAATTGCCACTTTTGAAAAAAGTGCTGGTTTTCAGGCACTGGTGCAGTTTAGTGATTTAGATACAGCATCCTCTGCAAGATCTGCTTTAGATGGAAGAAGCATTCCAAGGTATTTACTAGCGGAACATGTTGGGCCATGTCACCTGCGAATTTCGTTTTCTGCTCACACTGACTTGAATGTCAAATTCCAGAGTCATCGAAGCAGGGATTATACAAATCCAAATTTGCCTGTTGCCCCTTCTGCCATAGATGGAACTGGGCAGTTTGGCATTGGGCCTGATGGGCAAAGAAGAGAGCCAGAGAGTAATGTTCTTCTTGCATCTATTGAAAACATGCTATATGCTGTAACTGTTGATGTTTTGCATACGGTATTCTCAGCATTTGGTACAGTTCAGAAAATTGCAATGTTTGAGAAGAATGCAGGATGGCAGGCTTTAATTCAGTATGCAGATATACCAACTGCAGTAGTTGCCAAAGAGGCATTAGAAGGACATTCTATATATGACGGAGGCTATTGCAAACTACACCTCTCTTATTCACGCCACACAGACCTCAATGTTAAGGTTAATAATGATCGGAGCAGAGACTACACACTTCCAAAAGTAGGCGTTTTACAAAATCAACTGCCACTTATTGGTCAGCAGCTCTCTAGTCTGCCTGCTGGAGTTGGTGGACAGCCTCCATCTGCACCATATATGTATCCAGGGAATCATTTTGTGTCTGGTGTGCATCCACCACAACCAGCTAGTATGGCTGGACCTGTATCACAAACAACGGGATCACTGATTCAAGGAACTGCACCAAATCAAATTTACATGACCTCCCCTGCTCAGCTTGCCACATCATTAGGCATGTCCTCAGGATTTCCAGGACAAGCTCAGTTGTCAGTTCCACCTTACTCTTCTGCTACATATTTCTCAGGCCCTACTCCCATGCAGAATCCCGGACATTATACAAGCCCTATGGGTTCAGGTATGCCACCGCTAGCCAGTCAGAATCCTCATGGTGGCACAGCTTTTCCAATGCCTGCATACAGACAGCAGCCAATGCATATGCAAACGCCTGTGGGAAGAGTTCCTGCAAGTGCTTCTTCGACGTACTATATATAAATATCTGTGTAGCATTCCTCTGCCTCTCAGAAGCTGTTATTGGTATTGCTGTTTAAACGCCACTACATATAATGGAGCGTTGGACCGAATCAGTCTTTAAATGAATCATGCATTGAGCATACTTATCGATTCTCCCCGTGCTGTGTTCAGACGGCCATGCCTTTTATGTTCTGGTATCTTTTTGTAAAATACTTTTTTTAATACTTAATTTCTTTGTGGTATTCCACAGTTGCATTGTTGTTACTGTAAACAGATTGTAATAGTTTCCAGCCGGAGATGAAATTATATGAAAGGCAGCCAGATTTGATGAATTAAATGGGCATCTTGGTGATTTAATTGTATTCAATTTCATTATATTCAACGAAGATGAGAATTTGGAAAATTTTCACCAAATCAGATGGCAAGAAACATTGAAGAGTGACCGACTTGGTAAGAAACATCGAAGAGTGACCACAGTCTCTCACCACTGCACTTTTCAGTGCACTATATCCCTAAAAGGATGTAAATGATGGGATCGACGAGGCTTGAACCCACGATTACATCGTGACAAGGTGGTGTTCTAACTAATTGAACTACACTCTCGATACAGTGTAATTTAATTTAGTGTGACACTTAATTCTCTCGAGCCTTGTTTAATAATAATAACGAGACTTTGGCATGCC

Ace file of the UniGene sp_v2.0_unigene11203

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	polypyrimidine tract-binding protein 2 [Arabidopsis thaliana] sp\|Q9FGL9.1\|PTBP2_ARATH RecName: Full=Polypyrimidine tract-binding protein homolog 2 dbj\|BAB08421.1\| polypyrimidine tract-binding RNA transport protein-like [Arabidopsis thaliana] gb\|AAU90050.1	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	protein	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	regulation of RNA splicing	GO:0043484	Biological Process	76%
Blast2go	regulation of translation	GO:0006417	Biological Process	76%
Blast2go	pollen germination	GO:0009846	Biological Process	76%
Blast2go	RNA binding	GO:0003723	Molecular Function	76%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	76%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	76%
Blast2go	cytoplasmic mRNA processing body	GO:0000932	Cellular Component	76%
Blast2go	nucleus	GO:0005634	Cellular Component	76%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Peptidase M41	IPR000642	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	Peptidase, FtsH	IPR005936	-	-
Sma3	Peptidase M41, FtsH extracellular	IPR011546	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AA11

Fln msg:

Fln protein: MGSIAGQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKIVNTKVNVGSNRNQAFVEFADLNQAIAMVSYYASSPEQAQVRGKTVYLQYSNTHEIVNSKNSGDEASNVLLVTIEGVEAGDVSIDVLHLVFSAFGFVHKIATFEKSAGFQALVQFSDLDTASSARSALDGRSIPRYLLAEHVGPCHLRISFSAHTDLNVKFQSHRSRDYTNPNLPVAPSAIDGTGQFGIGPDGQRREPESNVLLASIENMLYAVTVDVLHTVFSAFGTVQKIAMFEKNAGWQALIQYADIPTAVVAKEALEGHSIYDGGYCKLHLSYSRHTDLNVKVNNDRSRDYTLPKVGVLQNQLPLIGQQLSSLPAGVGGQPPSAPYMYPGNHFVSGVHPPQPASMAGPVSQTTGSLIQGTAPNQIYMTSPAQLATSLGMSSGFPGQAQLSVPPYSSATYFSGPTPMQNPGHYTSPMGSGMPPLASQNPHGGTAFPMPAYRQQPMHMQTPVGRVPASASSTYYI*

Protein Length: 512

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACCTCATATGGCCGTGGTGCTCATTGTAGGGTTTGAATTTTGACAGTTGTCGCCATTTGTTATTTCCATTTGAGAGCAGGGTTGTTTTATCAGTGGTATTTTGTGTTTGCGCAGAACAGAAGGTTTGAAGATAAGGATACTGTAATTTGGCTGAAGGCTTTCGAGCCTTCGTAGCGGTGTTGAAAGCTTACAGGGGTTTGATAATTTTACCAGACATTTGACGCGTTGGTAATTATATAGGGTTCGCATTTTGCCGGGTCTGATAGATTCGGTCGTTATTCTTTTTATTGTGACTTGAAGCTCACGAGGGTTGATTGTGAACTTCAATACATTTTACCCAATTTGAGCGTTTAAGGGTGTGAAGCCTACAGGGTTTAATATTCTGTGGTCTGGTTGAGTCATTGGGTGTTTGCATCTCAAAGGGTTTGGTGTTTTAGGCCTTTTGAGCTTTCAGGGTTTGAACATTTCAGGTCTCGATAATTTCCGTTGCTGAAAGCTCCGAGTTTGAAGCTTGGGTAGA_-_ATGGGTTCCATAGCTGGCCAGCCGCAGTTCCGGTACACTCAACCACCATCGAAGGTTCTGCACCTTAGAAATTTGCCGTGGGAGTGCACAGAGGAAGAGCTTATTGAACTGGGGAAGCCGTTCGGGAAAATTGTCAACACCAAGGTTAATGTTGGATCGAATCGCAACCAGGCGTTTGTGGAATTTGCGGATTTGAATCAAGCTATTGCAATGGTTTCATATTATGCTTCATCGCCAGAACAGGCTCAGGTACGCGGCAAAACTGTGTACCTACAATACTCCAATACGCATGAAATCGTCAACAGCAAGAATTCCGGGGATGAAGCAAGCAATGTATTGCTGGTGACAATTGAGGGTGTAGAAGCTGGTGATGTCAGCATAGATGTTCTGCATTTGGTATTCTCAGCATTTGGTTTTGTACATAAAATTGCCACTTTTGAAAAAAGTGCTGGTTTTCAGGCACTGGTGCAGTTTAGTGATTTAGATACAGCATCCTCTGCAAGATCTGCTTTAGATGGAAGAAGCATTCCAAGGTATTTACTAGCGGAACATGTTGGGCCATGTCACCTGCGAATTTCGTTTTCTGCTCACACTGACTTGAATGTCAAATTCCAGAGTCATCGAAGCAGGGATTATACAAATCCAAATTTGCCTGTTGCCCCTTCTGCCATAGATGGAACTGGGCAGTTTGGCATTGGGCCTGATGGGCAAAGAAGAGAGCCAGAGAGTAATGTTCTTCTTGCATCTATTGAAAACATGCTATATGCTGTAACTGTTGATGTTTTGCATACGGTATTCTCAGCATTTGGTACAGTTCAGAAAATTGCAATGTTTGAGAAGAATGCAGGATGGCAGGCTTTAATTCAGTATGCAGATATACCAACTGCAGTAGTTGCCAAAGAGGCATTAGAAGGACATTCTATATATGACGGAGGCTATTGCAAACTACACCTCTCTTATTCACGCCACACAGACCTCAATGTTAAGGTTAATAATGATCGGAGCAGAGACTACACACTTCCAAAAGTAGGCGTTTTACAAAATCAACTGCCACTTATTGGTCAGCAGCTCTCTAGTCTGCCTGCTGGAGTTGGTGGACAGCCTCCATCTGCACCATATATGTATCCAGGGAATCATTTTGTGTCTGGTGTGCATCCACCACAACCAGCTAGTATGGCTGGACCTGTATCACAAACAACGGGATCACTGATTCAAGGAACTGCACCAAATCAAATTTACATGACCTCCCCTGCTCAGCTTGCCACATCATTAGGCATGTCCTCAGGATTTCCAGGACAAGCTCAGTTGTCAGTTCCACCTTACTCTTCTGCTACATATTTCTCAGGCCCTACTCCCATGCAGAATCCCGGACATTATACAAGCCCTATGGGTTCAGGTATGCCACCGCTAGCCAGTCAGAATCCTCATGGTGGCACAGCTTTTCCAATGCCTGCATACAGACAGCAGCCAATGCATATGCAAACGCCTGTGGGAAGAGTTCCTGCAAGTGCTTCTTCGACGTACTATATATAA___ATATCTGTGTAGCATTCCTCTGCCTCTCAGAAGCTGTTATTGGTATTGCTGTTTAAACGCCACTACATATAATGGAGCGTTGGACCGAATCAGTCTTTAAATGAATCATGCATTGAGCATACTTATCGATTCTCCCCGTGCTGTGTTCAGACGGCCATGCCTTTTATGTTCTGGTATCTTTTTGTAAAATACTTTTTTTAATACTTAATTTCTTTGTGGTATTCCACAGTTGCATTGTTGTTACTGTAAACAGATTGTAATAGTTTCCAGCCGGAGATGAAATTATATGAAAGGCAGCCAGATTTGATGAATTAAATGGGCATCTTGGTGATTTAATTGTATTCAATTTCATTATATTCAACGAAGATGAGAATTTGGAAAATTTTCACCAAATCAGATGGCAAGAAACATTGAAGAGTGACCGACTTGGTAAGAAACATCGAAGAGTGACCACAGTCTCTCACCACTGCACTTTTCAGTGCACTATATCCCTAAAAGGATGTAAATGATGGGATCGACGAGGCTTGAACCCACGATTACATCGTGACAAGGTGGTGTTCTAACTAATTGAACTACACTCTCGATACAGTGTAATTTAATTTAGTGTGACACTTAATTCTCTCGAGCCTTGTTTAATAATAATAACGAGACTTTGGCATGCC

Fln Alignment:

Contig11203___MGSIAGQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKIVNTKVNVGSNRNQAFVEFADLNQAIAMVSYYASSPEQAQVRGKTVYLQYSNTHEIVNSKNSGDEASNVLLVTIEGVEAGDVSIDVLHLVFSAFGFVHKIATFEKSAGFQALVQFSDLDTASSARSALDGRSIPRYLLAEHVGPCHLRISFSAHTDLNVKFQSHRSRDYTNPNLPVAPSAIDGTGQFGIGPDGQRREPESNVLLASIENMLYAVTVDVLHTVFSAFGTVQKIAMFEKNAGWQALIQYADIPTAVVAKEALEGHSIYDGGYCKLHLSYSRHTDLNVKVNNDRSRDYTLPKVGVLQNQLPLIGQQLSSLPAGVGGQPPSAPYMYPGNHFVSGVHPPQPASMAGPVSQTTGSLIQGTAPNQIYMTSPAQLATSLG-MSSGFPGQAQLSVPPYSSATYFSGPTPMQNPGHYTSPMGSGMPPLASQNPHGGTAFPMPAYRQQPMHMQTPVGRVP
D5AA11_______________MGSVAGQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKIVNTKVNVGSNRNQAFVEFAELNQAIAMVSYHASSPEQAQVRGKTVYLQYSNRHEIVNSKNSGDEASNVLLVTIEGVEAGDVSIDVLHLVFSAFGFVHKIATFEKSAGFQALVQFSDVDTASSARSALDGRSIPRYLLAEHVGPCHLRISFSAHTDLNVKFQSHRSRDYTNPNLPVAPSAIDGTGQFGIGPDGQRREPASNVLLASIENMQYAVTVDVLHTVFSAFGIVQKIAMFEKNAGWQALIQYADIPTAVIAKEALEGHFIYAGGYCKLHLSYSRHTDLNVKVNNDRSRDYTLPKVGILQNQLSILGQQPSSLPAGLGGQPTSAPYMYPGNHFVTGVHPPQPTSIAGSVSQTTGSLIQGYAPNQMYMTSPAQLATPLGTTSAGFPGQAHLSIPPYSSATYLSGPPPMQNPGHYTSPMGSGMPPFASQSPHGGPAFSMPPYSHQPMHMQMPVGRVP

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
215		20	80		0.995493
320	20			80	0.995493
381		16	83		0.994512
388	83	16			0.994512
391		83		16	0.994512
393	83		16		0.994512
395	83			16	0.994512
397		16	83		0.994512
398	16		83		0.994512
399		16		83	0.994512
401		16		83	0.994512
1697	16	83			0.994512
1731			80	20	0.995493
1751		40		60	1.0
1829		75		25	0.996473
1925	33			66	0.997452
1961		25		75	0.996473
1982	8		91		0.999766
2036		87		12	1.0
2139	11			88	0.999937
2154	23			76	1.0
2156	25			75	1.0
2171		75		25	1.0
2258	16		83		0.994512
2279			25	75	0.996473
2280	25			75	0.996473
2281	25			75	0.996473
2282		25		75	0.996473
2283	25			75	0.996473
2396	66		33		0.997452
2462			66	33	0.997452
2463		33	66		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
2711	2722	TAA TAA TAA TAA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain