SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11202

Length: 883 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene11202

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Dimer_Tnp_hAT domain containing protein	-	-	7.0e-11	28%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Blast2go	uncharacterized protein loc100255782	-	-	0.0	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein dimerization activity	GO:0046983	Molecular Function	0.0	78%
Blast2go	DNA binding	GO:0003677	Molecular Function	0.0	78%

Source	InterPros	Term	Type	Identity
Sma3	Glycosyl transferase, family 20	IPR001830	-	-
Sma3	Multi antimicrobial extrusion protein	IPR002528	-	-
Sma3	Zinc finger, BED-type predicted	IPR003656	-	-
Sma3	Ubiquitin interacting motif	IPR003903	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	HAT dimerisation	IPR008906	-	-
Sma3	Histidine triad motif	IPR011151	-	-
Sma3		IPR011523	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

SNPs (tot: 44)

Position	A %	C %	G %	T %	Probability
52			50	50	1.0
55			75	25	0.996473
57			50	50	1.0
58	50			50	1.0
96	25	75			0.996473
311	33		66		0.997452
344		66		33	0.997452
366	33	66			0.997452
403		66		33	0.997452
418		66	33		0.997452
440	33			66	0.997452
444	66			33	0.997452
445		66	33		0.997452
448		33	66		0.997452
449	33			66	0.997452
450	33			66	0.997452
451		33	66		0.997452
452			66	33	0.997452
460		75		25	0.996473
463		50		50	1.0
493		75	25		0.996473
496	25		50	25	0.995533
500		75		25	0.996473
519		33	66		0.997452
522		33		66	0.997452
524		66		33	0.997452
532		33	50	16	1.0
539			83	16	0.994512
552		16		83	0.994512
566	83	16			0.994512
567		16	83		0.994512
569	33		66		1.0
570		83		16	0.994512
575			80	20	0.995493
594	20		80		0.995493
607	60		40		1.0
638	25		75		0.996473
642	25	75			0.996473
647	50	50			1.0
673			50	50	1.0
685			25	75	0.996473
706	16		83		0.994512
724		83		16	0.994512
765			33	66	0.997452

SSRs (tot: 2)

Start position	End position	Sequence	Length
704	716	TGA TGA TGA TGA T	13
755	776	TAGCTAC TAGCTAC TAGCTAC T	22

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain