SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11159

Length: 786 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene11159 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative transcription initiation factor IIF beta subunit [Oryza sativa Japonica Group]	-	-	2.0e-09	30%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Blast2go	transcription initiation factor iif subunit	-	-	0.0	48%

Source	GOs	Term	Type	Identity
Blast2go	transcription initiation from RNA polymerase II promoter	GO:0006367	Biological Process	48%
Blast2go	RNA polymerase II transcription factor activity	GO:0003702	Molecular Function	48%
Blast2go	ATP binding	GO:0005524	Molecular Function	48%
Blast2go	catalytic activity	GO:0003824	Molecular Function	48%
Blast2go	transcription factor TFIIF complex	GO:0005674	Cellular Component	48%

Full-Lengther Next Prediction

SNPs (tot: 45)

Position	A %	C %	G %	T %	Probability
277			16	83	0.994512
279	83		16		0.994512
280	83			16	0.994512
281		83	16		0.994512
282	16			83	0.994512
284	16			83	0.994512
285			16	83	0.994512
286		16		83	0.994512
288	16	83			0.994512
290			16	83	0.994512
293	16			83	0.994512
294		16		83	0.994512
298		83	16		0.994512
339	20		80		0.995493
341	20			80	0.995493
376	33		66		0.997452
380		66	33		0.997452
381	33	66			0.997452
383	33	66			0.997452
388	33			66	0.997452
389		66	33		0.997452
390			33	66	0.997452
393	33			66	0.997452
395	66		33		0.997452
397	66	33			0.997452
398			25	75	0.996473
422	33		66		0.997452
423	66		33		0.997452
425			33	66	0.997452
426	33			66	0.997452
428	33		66		0.997452
436	66		33		0.997452
437			33	66	0.997452
438			66	33	0.997452
443		25	75		0.996473
486			16	83	0.994512
488			16	83	0.994512
489	16			83	0.994512
490	16	83			0.994512
531	16		66	16	0.988813
538		16		83	0.994512
539	16		83		0.994512
540			16	83	0.994512
541		16	83		0.994512
545	83		16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain