SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11134

Length: 1420 nt

Origin of reads: Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene11134

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	uncharacterized protein [Arabidopsis thaliana] gb\|AAG60093.1\|AC073178_4 unknown protein [Arabidopsis thaliana] gb\|AAX55097.1\| hypothetical protein At1g69430 [Arabidopsis thaliana] gb\|AAZ52711.1\| hypothetical protein At1g69430 [Arabidopsis thaliana] gb\|AEE	-	-	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	29%
Blast2go	uncharacterized protein	-	-	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	membrane	GO:0016020	Cellular Component	0.0	69%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	0.0	69%

Source	InterPros	Term	Type	e value	Identity
Sma3	Asp/Glu racemase, active site	IPR018187	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LL32

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 317 - 335

Fln protein: MYQNPSL*FVGLPGNCSATYLPCIDNSSVLGCRSSVVGKLSFRFRLVAETSGLPKSNFTELVCRKLSESVLSLKIRLPFLITLWLFGKAAIVHSVAGTYAGKKLTIAKFITMIRKIWKRVMLTYIWVCIAIIGCIAVFLLLLVIVVNMAVSMGICSNCAIYAVLGLGVFFSVLFAHTLIICNLANVISIFEDCRGLAALFRSMHLIKGRTQVGLMIILGIASGTAFVESLYEYRVKSLNYGDVYSRMWEGPLLIIMYTFVVLIDAMMSCIFYFTCKCSSLESFDSHSLLEHTTSFSGSMELANVNDSSPSKLLVGS*

Protein Length: 318

Fln nts: AATGTATCAGAATCCTTCGCTTTAATTCGTCGGGCTTCCTGGTAATTGCAGCGCTACTTATCTGCCCTGTATCGACAATTCTTCTGTCCTTGGCTGTCGCTCATCTGTGGTTGGAAAACTGTCTTTTAGGTTTAGATTAGTAGCAGAGACATCCGGGCTGCCTAAGAGCAATTTTACCGAACTTGTGTGCCGGAAATTATCTGAGAGTGTTCTTTCGTTGAAAATCCGCCTCCCTTTCTTGATCACCCTTTGGCTATTTGGCAAAGCTGCAATAGTGCACTCCGTGGCTGGAACGTATGCAGGTAAGAAACTTACAATTGCAAAGTTTATCACCATGATTCGCAAGATCTGGAAACGTGTCATGTTAACTTATATTTGGGTCTGTATTGCCATTATTGGATGCATTGCTGTTTTCCTCCTGCTGCTTGTCATCGTGGTGAATATGGCAGTCTCCATGGGGATTTGTTCAAACTGTGCTATCTATGCTGTGCTTGGGTTAGGAGTATTTTTCTCTGTGCTGTTTGCACACACTTTGATTATATGCAATTTGGCCAATGTGATCTCCATCTTCGAGGATTGCCGGGGCTTGGCAGCATTGTTTAGATCCATGCATTTAATCAAAGGGAGAACCCAAGTGGGTCTCATGATAATCCTGGGAATAGCTAGTGGGACTGCTTTTGTGGAAAGCCTCTATGAATATAGAGTGAAGTCTTTGAATTATGGTGATGTGTATTCCAGGATGTGGGAGGGTCCTCTTTTGATCATCATGTATACTTTTGTGGTGCTTATTGATGCCATGATGAGCTGCATCTTCTATTTCACTTGCAAATGTTCAAGTTTGGAAAGCTTTGACAGCCATTCTCTGCTGGAACACACCACCAGTTTTTCTGGATCGATGGAGCTAGCTAATGTGAATGATAGCTCCCCATCAAAGCTATTGGTGGGAAGCTAG___TGGATCGACTACACTGTAGAGAGGATGAAAGCTGCTGTGCATTATTTATTACCCTTCCGAACTTCAGGGAAGGGACATCTCTGTCAGGCAGATAATAGGTATTCTTTGGTTGCAGCTGTCATATTAGATGCTGGCATGTCTTTCGTTTAACATGCTGTAGCCATATTCTCTGACCCTGTTACTGAATTGATGAACAGTCAATTTTACGTTATCTAGTCCACACCATATATTATGTGTTTGCCAGCCAAAACCACCATATTATTCCTTCCAATTTTGTAATTACATTTGCTGCCAACATTATTTATGCAGAGACATCTGTTCTTTTAATAAATCATTCAATGACATCATTCATATCCTAGCTCAGTGAGCTGGTGCCATTGTTAGTACAAATAGAGGGAGAAAGAAAACATGTTCATTTCATGGCTTACTCCTCTAGTTTGTGTGCTGCCATTGTATTCTGAAATGGAA

Fln Alignment:

Contig11134___LPFLITLWLFGKAAIVHSVAGTYAGKKLTIAKFITMIRKIWKRVMLTYIWVCIAIIG-----CIAXXXXXXXXXXNMAVSMGICSNCAIYAVLGLGVFFSVLFAHTLIICNLANVISIFEDCRGLAALFRSMHLIKGRTQVGLMIILGIASGTAFVESLYEYRVKSLN-YGDVYSRMWEGPLLIIMYTFVVLIDAMMSCIFYFTCKCSSLESFDSHSLLEHTTSFSG
B8LL32_______________LVFLLAFSLLSTAAVVYTVACIYTGKQITYAKVMSVVPRVWKRLMLTFLWYFLIMIGYNTAVMVTFVVVILTVGVDNTVAFGLCVVVLLAVFLAVHVYISAIW-------HVASVISVLEDRYGIGAIKKSRDLIKGKRLVAFVLIFFYFVVWAVIQGIFRKKVVHVSGGGGIGSRVGFGVLLVGLLVYVNLIGLLVQSVLYYVCKSYHHQSIDKSALSDHLEEYLG

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
721	20			80	0.995493
1015		87	12		0.992554
1016			12	87	0.992554
1018		87	12		0.992554
1019		75		25	1.0
1022	75	25			1.0
1027	75		25		1.0
1029		25	75		1.0
1030			75	25	1.0
1031	75		25		1.0
1032	75			25	1.0
1033		25	75		1.0
1034	25		75		1.0
1035		25	75		1.0
1036	88			11	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain