SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11128

Length: 911 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene11128

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam10243, MIP-T3, Microtubule-binding protein MIP-T3	-	-	4.0e-05	18%
FL-Next	sp=Pumilio homolog 24; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	65%
Blast2go	protein	-	-	1.71025e-33	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	RNA binding	GO:0003723	Molecular Function	1.71025e-33	79%
Blast2go	nucleolus	GO:0005730	Cellular Component	1.71025e-33	79%

Source	InterPros	Term	Type	e value	Identity
Sma3	Pumilio RNA-binding repeat	IPR001313	-	0.0	-
Sma3	Armadillo-like helical	IPR011989	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 6)

Position	A %	C %	G %	Probability
74	25		25	0.995533
75		25	25	0.995533
76	40		60	1.0
77	40		60	1.0
78		40	60	1.0
365	90		10	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain