SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11078

Length: 901 nt

Origin of reads: Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene11078

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Homeobox-leucine zipper protein HOX15; AltName: Full=HD-ZIP protein HOX15; AltName: Full=Homeodomain transcription factor HOX15; AltName: Full=OsHox15 gb\|AAL91609.1\|AC099400_15 Putative homeobox protein HAT22 [Oryza sativa Japonica Group] gb	-	-	9.0e-21	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	40%
Blast2go	homeobox-leucine zipper protein hat14	-	-	5.71408e-36	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	5.71408e-36	79%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	5.71408e-36	79%
Blast2go	transcription regulator activity	GO:0030528	Molecular Function	5.71408e-36	79%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	5.71408e-36	79%
Blast2go	transcription activator activity	GO:0016563	Molecular Function	5.71408e-36	79%
Blast2go	nucleus	GO:0005634	Cellular Component	5.71408e-36	79%

Source	InterPros	Term	Type	Identity
Sma3	Helix-turn-helix motif	IPR000047	-	-
Sma3	Major intrinsic protein	IPR000425	-	-
Sma3	Homeodomain	IPR001356	-	-
Sma3	Leucine zipper, homeobox-associated	IPR003106	-	-
Sma3	HD-ZIP protein, N-terminal	IPR006712	-	-
Sma3		IPR012287	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NKN4

Fln msg: Separated hits, possible frame ERROR between 732 and 735, Distance to subject end: 52 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 250 - 309

Fln protein: MDQNCSADLSLRLGTGEGTATRENDGIYLSQRNVNAHPLQLDLFPVAPDSGHGTLPWENTSQSIGTDGVSKVRSEREAKDPIQVVGVSWRSDANKFHASCFSNDDARAINVSSSNSTVDSNATNPRNGYAEIKRKQGDGEELENDRVWSRVLGVVEEEGSSTKKLRLSREQCARLEESFRKNTVPEPKERLTLxxQLNLRIRQVEVWFQNRRARTKLKQTEVDRELLKRYNELLADENRKLHTGLEKLKA

Protein Length: 251

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTGTTAAGTAGTGAGAAGTCAGGCCGGACTCTAGATCCATCGCCCATTCTAGCTTCCTGCATAATACCTTTCTGCTTGCTTCGATCATTTCCACTCTATCGAAACATTAGGAAAAACAAAGGGTT_-_ATGGATCAGAATTGCAGTGCAGACCTTTCTTTACGTTTGGGTACCGGTGAGGGGACAGCCACCAGAGAAAATGATGGAATATACCTTTCACAAAGAAATGTGAATGCACATCCACTGCAGTTAGATCTGTTTCCAGTGGCCCCTGACTCTGGCCACGGCACTTTGCCATGGGAGAATACCTCACAATCCATCGGAACCGATGGTGTCAGTAAGGTGAGATCAGAGAGAGAAGCGAAGGATCCGATCCAGGTGGTAGGTGTGTCATGGCGATCCGATGCCAACAAATTCCATGCCTCATGTTTCTCCAACGATGATGCACGCGCCATTAATGTGTCGTCATCCAATAGCACCGTGGATTCCAACGCGACTAACCCTAGGAACGGGTATGCAGAGATCAAGCGAAAACAGGGTGATGGCGAGGAGTTGGAGAATGACCGAGTTTGGTCGAGGGTACTCGGTGTTGTAGAAGAAGAGGGCTCTTCCACGAAGAAGCTTAGACTCTCCAGAGAGCAATGTGCTCGTTTGGAAGAAAGCTTCAGAAAGAACACGGTACCCGAACCTAAGGAACGTCTGACGTTGGCxxxTCAGTTAAATCTCCGTATTCGACAAGTTGAGGTGTGGTTCCAGAATAGACGAGCAAGGACGAAGCTTAAGCAAACAGAAGTGGACCGAGAGCTTCTGAAAAGATATAATGAGCTACTTGCAGATGAGAACAGAAAACTTCACACAGGGCTGGAGAAACTGAAAGCTTT

Fln Alignment:

Contig11078___KQRVMD-QNCSADLSLRLGTGEGTATRENDGIYLSQRNVNAHPLQLDLFPVAPDSGHGTLPWENTSQSIGTDGVSKVRSEREAKDPIQVVGVSWRSDANKFHASCFSNDDARAIXXXXXXXXXXXXXXXPRNG-------YA-EIKRKQGDGEELENDRVWSRVLGV-VEEEGSSTKKLRLSREQCARLEESFRKNTVPEPKERLTLAxQLNLRIRQVEVWFQNRRARTKLKQTEVDRELLKRYNELLADENRKLHTGLEKLKA
A9NKN4_______________KQMGMDMEDCNTGLGLGMSIGLGIGLLRED-LHSHRHHVNGPPVQLDLLPLAPGLPSRDLPWGKTSP--GTDGE---RSAGESK-----ATVPRRIDVNKLPASCYYNEDAGTINVSSPNSALSSFHVDSGGAINAESSCYAMSVKRERDATDELEADRACSRVSDEEADQEGGTRKKLRLSKEQSALLEESFKENSSLNPKQKQALAxRLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCESLTDENRRLQKELQELRA

SNPs (tot: 48)

Position	A %	C %	G %	T %	Probability
42	75	25			0.996473
47	75			25	0.996473
49	25		75		0.996473
52			75	25	0.996473
54	75		25		0.996473
57		75	25		0.996473
59	75	25			0.996473
60	25		75		0.996473
61	75	25			0.996473
64	25	75			0.996473
71		60	40		1.0
77	40	60			1.0
130	40			60	1.0
137			83	16	0.994512
138	16	83			0.994512
139	83		16		0.994512
140	83			16	0.994512
141	83		16		0.994512
144	72		9		0.999994
204	18		81		0.999994
209	45		54		1.0
268	45		54		1.0
302	50		50		1.0
304	40	60			1.0
305		60		40	1.0
306	10		90		0.90298
308			80	20	0.999996
319	66	33			1.0
324	45	55			1.0
325			90	10	0.999898
335		45	55		1.0
336	45	55			1.0
340	5	50	45		1.0
343		55		45	1.0
346	55		45		1.0
359	55		45		1.0
399	50		28		1.0
400	50		50		1.0
402			41	58	1.0
405			36	63	1.0
406	63			36	1.0
408		54	45		1.0
441	50	50			1.0
444		60		40	1.0
445		40	60		1.0
487	25		75		0.996473
497	75		25		0.996473
517			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain