SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11030

Length: 645 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene11030

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Blast2go	unknown [Picea sitchensis]	-	-	5.60265e-11	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	mRNA processing	GO:0006397	Biological Process	5.60265e-11	89%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	5.60265e-11	89%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
251			80	20	0.995493
252		20	80		0.995493
257		20	80		0.995493
258	20			80	0.995493
292			16	83	0.994512
304			83	16	0.994512
307		83	16		0.994512
309	83			16	0.994512
313	83	16			0.994512
315	16		83		0.994512
563		25		75	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain