SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene11011

Length: 2529 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene11011
AATTCTAATAAGATAGGAAAAGAGAAATATGAAAGAAAATCTTTAATTTCTACACTTGCTATTGGAGATTTTGAGTCGAACTCTGTTGCAAATGGCTTTAACAAGCTTGGGGAGGCTCAAAATATCTCATCAGAAAAAGAAACTCTTGAATGCCAGTTGAATGAAGAAATCAGCAGACTTAAAAATGAGCTTAATATCATACAATCTGAAAAGCAAGAACTAGAAGGGATGTTTCAAGTGGCAAGCAACAATCTAGAGGCTCTCAAAGCTCAACTCCTAGAATCAGAGAAAAAAGTTGCAGATTTACAGACAGAACTTACTGCAAGTAAGGAATTGAAGCAATTGAGGGAGGATCAATTTGAAAATCAAGTGTCATTGAATGAAGAGCTTGAATTCCAACTCAAGGCTGCTCAAGCTGAAATAAATCGGTTTAAAGAAAAATATACATCACTACAAGCAGAATTTGAAGAGAAAGGCAGCTGTTTCCATGAATTAGAGACCACATGTCTTGACCTGCAACTACAGTTAGAGAGTAGACACAAACCTGACAGCTCGAGAGATGGAAAGATGCCAGCTCTACACTACGCTGATGAGGATGAGATACGCGCAAGAAAGGAAAGAGATATTTCAGCTGCTACCAAGAAGCTTAGTGAATGCCAACAAACAATACTTGCTTTAGAGAAGCAATTAAAGGTTCTTGCTGCTCCAAGTGATGCTAAAGACTTTTCATTTCCATCATCTTCAGGTTCACTGTCACTTGAAAAAAATACTCCAAGCAGAAATCAGCGCGCCTCTCTTTTTGACCACATGCAAGTGGAAAGTACAACTGAAGAATCTCAGGACTGTCCACCTGAGTCAACAAAACCAAAAGAAGTTCTGCGTCCAAGAGCAGAGAATGATGAAAATTCTCAGCAAGATTCACATACTCCAAGGAAGAGTAAAAGTGGATTATTTTATGGTTCACAGATATCGACAGATTCCCCAAATATTGATGCTCACAAAGATGTCCAAATTCATACTAGTAGAGACAATTCTCCCGCAGATTCAAATACCACCTCAACCATGTCTCCAGCAAAATTCTTTAGTATGAAGAAAAAAAGCTCAGCAAATGAATCTTCCAGTGCTGGAGCAATCGAACCTTATCCAGCTAAAAAGCGTAGCCGTGCAGGAGGTTTTAGTAGATTCCTCATGCGGACAAAGAAAGGGCGTTGACAGGGTTCAGCTATCCAATTGATGAAGACTTAAAAACTTCCCTCCGCTCCCCCCACCATTATTTTCATTTCAACTTTCTTACTACTTTGATGCAAGTCGATAACTTGTTAGAAGGTTATTCCAGGTTATATTGTATCATGTGAATGATATGGATTTGGCATCCTCACTGTTCATTACCACACCTGGAAATGAAGCATTAGTATTTTTTGGAGTGGTAGTTGAGTTGTTAGGCTGACTGGTTAATGCTGCTGCTCCAAACTTGATATCTGGCTGACATCTAGTGATCTACTGAGTGAGGAGTTTTATACAGAAAGGAAACAGAAAAGGCTGCTTGAAGTGATCATAACTCTCTTGGACTTGACCAGAAAATGATTGAAAATGATTGTATAAGTAGGGCGATCTCCTTGCTCTTTTATATAACTGTTTCTTGAGGATGTTAGTAATCTGAGGGAAAATTTGTAGCATATAAATTTCAGGTTTACCATCTTGCTGTGACCTCCTTGTGTCCTATGCAAGAATCTAATCTCTCAATCAGTTGTAGCTTGCTTGTGCAGCAAGAGATGGGCATTCCCACCCTGTTTCCTGGTTCAAGGCCTGCTACATTGCTTATCATGGAAGAGATGCATCAGGGAGAGATTGCTGATTCATTATTTTGGGGCTTGGTCTTACCCCAAGCTCCTTTCAGACTCTCTGACATAGAATGAAGTTTTGGCATTTGTTGATCATGAGGTTTGGATCGCTAGGGTTCCCAACATGCTGATAAGTGGAGGGTTTTGTAACAAAAACTTGAATTTGAGGAGAATGTGACACCAACAGGTACAAAATAAAGTGAAGTTAACAGTCAGATTGCTTCTCCAAAAAGCAATGCTCAGTTATAGATAATAAAGAGGCTGCTAAAGGCTTATGGCAGGTCCAGTCCCCTGGAATGACAAAATATGAAGCTCTGCAACTGCTATTTTCAACAATACTTGGCCAAAGTAGAATTGAACAGGTTACTTGTATGTGCATTGAACAGAGAAATTGCCGAACTTTGGCTCAGCATAATTTGCATGGATTTGACACTCTTGTGCAGGGATTATGTGTGGTGTGAATAAATGAAGTAGAGAGACAGTATGAACTGCAACTTTCTTAATGGTTGCAAGGAAGATGGTGTTATATACACGATATGTTTTAAGTCATTTGTCCAAATAAAGAAAATCAGCATTTGTTGCTTGCTTAAATTGTTACTGATATATGCAGCTGCTGTTATACTGGTTTGTTTATTTTGGTCAACACTATAAGCATTTAAGTATTGGTTTTACTAAATCTGACCTTGAT

Ace file of the UniGene sp_v2.0_unigene11011

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Myosin heavy chain, fast skeletal muscle, embryonic, putative n=1 Tax=Ricinus communis RepID=B9RYE4_RICCO	-	-	7.0e-32	35%
FL-Next	sp=Filament-like plant protein 6; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	26%
Blast2go	filament-like plant protein 7-like	-	-	9.54942e-36	55%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	9.54942e-36	55%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9C698

Fln msg: your sequence is shorter than subject: 404 - 1054

Fln protein: NSNKIGKEKYERKSLISTLAIGDFESNSVANGFNKLGEAQNISSEKETLECQLNEEISRLKNELNIIQSEKQELEGMFQVASNNLEALKAQLLESEKKVADLQTELTASKELKQLREDQFENQVSLNEELEFQLKAAQAEINRFKEKYTSLQAEFEEKGSCFHELETTCLDLQLQLESRHKPDSSRDGKMPALHYADEDEIRARKERDISAATKKLSECQQTILALEKQLKVLAAPSDAKDFSFPSSSGSLSLEKNTPSRNQRASLFDHMQVESTTEESQDCPPESTKPKEVLRPRAENDENSQQDSHTPRKSKSGLFYGSQISTDSPNIDAHKDVQIHTSRDNSPADSNTTSTMSPAKFFSMKKKSSANESSSAGAIEPYPAKKRSRAGGFSRFLMRTKKGR*

Protein Length: 405

Fln nts: AATTCTAATAAGATAGGAAAAGAGAAATATGAAAGAAAATCTTTAATTTCTACACTTGCTATTGGAGATTTTGAGTCGAACTCTGTTGCAAATGGCTTTAACAAGCTTGGGGAGGCTCAAAATATCTCATCAGAAAAAGAAACTCTTGAATGCCAGTTGAATGAAGAAATCAGCAGACTTAAAAATGAGCTTAATATCATACAATCTGAAAAGCAAGAACTAGAAGGGATGTTTCAAGTGGCAAGCAACAATCTAGAGGCTCTCAAAGCTCAACTCCTAGAATCAGAGAAAAAAGTTGCAGATTTACAGACAGAACTTACTGCAAGTAAGGAATTGAAGCAATTGAGGGAGGATCAATTTGAAAATCAAGTGTCATTGAATGAAGAGCTTGAATTCCAACTCAAGGCTGCTCAAGCTGAAATAAATCGGTTTAAAGAAAAATATACATCACTACAAGCAGAATTTGAAGAGAAAGGCAGCTGTTTCCATGAATTAGAGACCACATGTCTTGACCTGCAACTACAGTTAGAGAGTAGACACAAACCTGACAGCTCGAGAGATGGAAAGATGCCAGCTCTACACTACGCTGATGAGGATGAGATACGCGCAAGAAAGGAAAGAGATATTTCAGCTGCTACCAAGAAGCTTAGTGAATGCCAACAAACAATACTTGCTTTAGAGAAGCAATTAAAGGTTCTTGCTGCTCCAAGTGATGCTAAAGACTTTTCATTTCCATCATCTTCAGGTTCACTGTCACTTGAAAAAAATACTCCAAGCAGAAATCAGCGCGCCTCTCTTTTTGACCACATGCAAGTGGAAAGTACAACTGAAGAATCTCAGGACTGTCCACCTGAGTCAACAAAACCAAAAGAAGTTCTGCGTCCAAGAGCAGAGAATGATGAAAATTCTCAGCAAGATTCACATACTCCAAGGAAGAGTAAAAGTGGATTATTTTATGGTTCACAGATATCGACAGATTCCCCAAATATTGATGCTCACAAAGATGTCCAAATTCATACTAGTAGAGACAATTCTCCCGCAGATTCAAATACCACCTCAACCATGTCTCCAGCAAAATTCTTTAGTATGAAGAAAAAAAGCTCAGCAAATGAATCTTCCAGTGCTGGAGCAATCGAACCTTATCCAGCTAAAAAGCGTAGCCGTGCAGGAGGTTTTAGTAGATTCCTCATGCGGACAAAGAAAGGGCGTTGA___CAGGGTTCAGCTATCCAATTGATGAAGACTTAAAAACTTCCCTCCGCTCCCCCCACCATTATTTTCATTTCAACTTTCTTACTACTTTGATGCAAGTCGATAACTTGTTAGAAGGTTATTCCAGGTTATATTGTATCATGTGAATGATATGGATTTGGCATCCTCACTGTTCATTACCACACCTGGAAATGAAGCATTAGTATTTTTTGGAGTGGTAGTTGAGTTGTTAGGCTGACTGGTTAATGCTGCTGCTCCAAACTTGATATCTGGCTGACATCTAGTGATCTACTGAGTGAGGAGTTTTATACAGAAAGGAAACAGAAAAGGCTGCTTGAAGTGATCATAACTCTCTTGGACTTGACCAGAAAATGATTGAAAATGATTGTATAAGTAGGGCGATCTCCTTGCTCTTTTATATAACTGTTTCTTGAGGATGTTAGTAATCTGAGGGAAAATTTGTAGCATATAAATTTCAGGTTTACCATCTTGCTGTGACCTCCTTGTGTCCTATGCAAGAATCTAATCTCTCAATCAGTTGTAGCTTGCTTGTGCAGCAAGAGATGGGCATTCCCACCCTGTTTCCTGGTTCAAGGCCTGCTACATTGCTTATCATGGAAGAGATGCATCAGGGAGAGATTGCTGATTCATTATTTTGGGGCTTGGTCTTACCCCAAGCTCCTTTCAGACTCTCTGACATAGAATGAAGTTTTGGCATTTGTTGATCATGAGGTTTGGATCGCTAGGGTTCCCAACATGCTGATAAGTGGAGGGTTTTGTAACAAAAACTTGAATTTGAGGAGAATGTGACACCAACAGGTACAAAATAAAGTGAAGTTAACAGTCAGATTGCTTCTCCAAAAAGCAATGCTCAGTTATAGATAATAAAGAGGCTGCTAAAGGCTTATGGCAGGTCCAGTCCCCTGGAATGACAAAATATGAAGCTCTGCAACTGCTATTTTCAACAATACTTGGCCAAAGTAGAATTGAACAGGTTACTTGTATGTGCATTGAACAGAGAAATTGCCGAACTTTGGCTCAGCATAATTTGCATGGATTTGACACTCTTGTGCAGGGATTATGTGTGGTGTGAATAAATGAAGTAGAGAGACAGTATGAACTGCAACTTTCTTAATGGTTGCAAGGAAGATGGTGTTATATACACGATATGTTTTAAGTCATTTGTCCAAATAAAGAAAATCAGCATTTGTTGCTTGCTTAAATTGTTACTGATATATGCAGCTGCTGTTATACTGGTTTGTTTATTTTGGTCAACACTATAAGCATTTAAGTATTGGTTTTACTAAATCTGACCTTGAT

Fln Alignment:

Contig11011___EEISRLKNELNIIQSEKQELEGMFQVASNNLEALKAQLLESEKKVADLQTELTASKELKQLREDQFENQVSLNEELEFQLKAAQAEINRFKEKYTSLQAEFEEKGSCFHELETTCLDLQLQLESRHKPDSSRDGKMPALHYADEDEIRARKERDISAATKKLSECQQTILALEKQLKVL-AAPSDAKDXXXXXXXXXXXXEKNTPSRNQRASLFDHMQVESTTE-----ESQDCPPESTKPKEVLRPRAENDENSQQDSH---TPRKSKSGL--FYGSQ
Q9C698_______________ESDSKLQ-EIEELRSEKEKM-------AVDIEGLKCQLQESEQLLADIRSQFDSAQRSNRLADTQLRCMTESYRSLESRAADLEIDVNQLKEKIQKLENELEDEKCNHQEAILRCHELEEHIQ-RHRNTSL------VAEDDEEADIKSKQERELSAAAEKLAECQETIFVLGKQLKSFRPQPEQMRSPQTRNESYSEEEELGTTTTSVPKNYAVVDEGDSVNEVPRFMESPKCPSDSETSDTTTSPSRVGSRLSRSGSSTNATPEKASRGISRFFSSK

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
309			66	33	0.997452
332	66		33		0.997452
552	25	75			0.996473
591	25			75	0.996473
1155	33	66			0.997452
1156		33		66	0.997452
1158	66			33	0.997452
1159	66			33	0.997452
1256	33	66			0.997452
1268		60		20	0.99255
1269		80	20		0.995493
1270		80		20	0.995493
1272	20	80			0.995493
1274	80			20	0.995493
1276	20	80			0.995493
1313	83		16		0.994512
1578		25		75	1.0
1654	25			75	0.996473
1655			75	25	0.996473
1656	25			75	0.996473
1657		25		75	0.996473
1659			66	33	0.997452
2187		16		83	0.999991
2245	19		80		1.0
2255		28		71	1.0
2344	10			90	0.90298
2345		10		90	0.90298
2346	10			90	0.90298
2347		90		10	0.90298

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain