SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene10983

Length: 917 nt

Origin of reads: Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene10983

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	53%
Blast2go	low quality protein: heat repeat-containing protein 7a homolog	-	-	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	plastid	GO:0009536	Cellular Component	0.0	66%

Source	InterPros	Term	Type	Identity
Sma3	HEAT	IPR000357	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Armadillo-like helical	IPR011989	-	-

Full-Lengther Next Prediction

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
222	66	33			0.997452
231		33		66	0.997452
239	66			33	0.997452
240	66		33		0.997452
244	33			66	0.997452
245		33		66	0.997452
246			66	33	0.997452
248	25	75			0.996473
249			25	75	0.996473
251		25		75	0.996473
252			25	75	0.996473
257	75	25			0.996473
258		25		75	0.996473
268	75		25		0.996473
270		25	75		0.996473
274	80		20		0.995493
277			20	80	0.995493
282		20		80	0.995493
284	80			20	0.995493
285	80			20	0.995493
286		80	20		0.995493
287	80		20		0.995493
288		20	80		0.995493
292	80			20	0.995493
293		20	80		0.995493
294	20			80	0.995493
295		20		80	0.995493
297		20		80	0.995493
298	20			80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain