SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene10909

Length: 1642 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene10909

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	MDR-like ABC transporter n=1 Tax=Taxus cuspidata RepID=E6Y0T0_TAXCU	-	-	77%
FL-Next	tr=MDR-like ABC transporter; Taxus cuspidata (Japanese yew).	-	-	81%
Blast2go	multidrug resistance protein	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	Xenobiotic-transporting ATPase.	EC:3.6.3.44	-	0.0	85%
Blast2go	Phosphate-transporting ATPase.	EC:3.6.3.27	-	0.0	85%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	85%
Blast2go	ATP catabolic process	GO:0006200	Biological Process	85%
Blast2go	xenobiotic-transporting ATPase activity	GO:0008559	Molecular Function	85%
Blast2go	ATP binding	GO:0005524	Molecular Function	85%
Blast2go	phosphate ion transmembrane-transporting ATPase activity	GO:0015415	Molecular Function	85%
Blast2go	integral to membrane	GO:0016021	Cellular Component	85%
Blast2go	ATP-binding cassette (ABC) transporter complex	GO:0043190	Cellular Component	85%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	85%
Blast2go	plasma membrane	GO:0005886	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	ABC transporter, transmembrane domain	IPR001140	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Ribosomal protein L10, eubacterial, conserved site	IPR002363	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	K Homology domain, type 1	IPR004088	-	-
Sma3	Vacuolar fusion protein MON1	IPR004353	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	Leucine-rich repeat 2	IPR013101	-	-
Sma3		IPR013596	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: E6Y0T0

Fln msg: your sequence is shorter than subject: 545 - 1316

Fln protein: CSVIASFYEPPHKLRKDASFWALMYIVLATTCLVMAPTQMYSFAVAGGRLVRRIRSLTFSKVVYQEIGWFDDSENSSGAIGARLSTDAATVRSMVGDALSLVVQNISTILAGVLIAFSANWKLAFLILGLLPLLGLQGWVQVKFMQGFSGDSKVMYEEASQVANDAVGSIRTVASFSAEDKVMSLYNEKCSVPLKGGIRQGIISGLGLGIANFLLFSVYAVSFWVGARMVEHGETTFRKVFRVFFALTMAAMGVSQSAGLAPDIAKVKSSVNSVFEILDRKSKIDASDVSGTTLENVKGDIEFRHVSFKYATRPDIQIFRDLSLSVHSGKTVALVGESGSGKSTVISLLERFYDPDSGRILLDGVEIQKLQLKWLRQQMGLVSQEPILFNDSIRANIAYGKEGIVSDEQIIIAAEASNAHKFISRLPQGYDTSVGERGVQLSGGQKQRIAIARAIIKDPSILLLDEATSALDAESERVVQDALDRVMVNRTTIVVAHRLSTIKDADLIAVVKNGVIAEQGKHDQLLDIRDGAYASLVKLHMASS*

Protein Length: 546

Fln nts: AATGTAGTGTTATTGCCAGTTTCTATGAACCTCCACATAAACTTCGAAAAGATGCCAGTTTCTGGGCACTTATGTATATCGTTTTGGCAACAACATGCCTCGTCATGGCACCAACACAGATGTACAGTTTTGCTGTTGCGGGTGGCAGGCTTGTGCGACGTATTCGATCATTGACATTTAGCAAAGTTGTTTACCAGGAGATTGGATGGTTTGATGATAGTGAAAATTCAAGTGGTGCAATAGGTGCAAGATTATCAACAGATGCTGCCACTGTACGTAGCATGGTGGGAGATGCTTTGTCACTTGTTGTGCAGAATATTTCAACAATCCTTGCTGGTGTTCTTATAGCTTTTTCAGCGAACTGGAAGTTGGCATTTTTGATATTGGGTCTTCTGCCTCTGCTAGGTCTTCAAGGTTGGGTTCAAGTGAAGTTCATGCAGGGCTTTTCTGGTGATTCAAAGGTGATGTATGAGGAAGCCAGTCAGGTTGCAAATGATGCTGTTGGAAGCATTCGCACTGTTGCCTCCTTTTCTGCAGAGGACAAGGTGATGAGCCTCTACAATGAAAAATGCTCTGTTCCCTTGAAAGGTGGAATTCGGCAAGGAATTATAAGTGGACTTGGTCTTGGAATAGCAAATTTCCTATTGTTTTCAGTATATGCAGTTAGCTTTTGGGTAGGCGCTCGGATGGTTGAACATGGGGAAACAACCTTCCGCAAAGTTTTCAGGGTCTTTTTCGCTCTCACAATGGCTGCCATGGGGGTTTCTCAGTCAGCAGGCCTGGCCCCCGATATTGCAAAAGTAAAATCATCTGTCAATTCAGTGTTTGAAATACTTGATCGGAAATCCAAAATTGATGCAAGTGATGTCTCAGGGACTACCTTAGAAAATGTAAAAGGCGACATTGAGTTTCGCCATGTTAGCTTTAAATATGCTACTCGCCCAGACATACAAATTTTCCGCGATTTAAGCCTTTCTGTCCATTCTGGAAAGACTGTTGCTCTTGTGGGAGAAAGTGGAAGTGGAAAATCAACTGTCATTTCACTTTTGGAACGATTCTATGATCCTGACTCAGGCCGCATATTACTTGATGGCGTTGAAATCCAAAAACTGCAACTTAAATGGTTGAGGCAACAAATGGGCTTGGTTAGCCAGGAGCCTATTTTGTTTAATGATTCAATTCGTGCAAATATTGCTTATGGAAAGGAGGGAATTGTTTCTGATGAACAGATTATAATAGCTGCTGAGGCTTCCAATGCTCATAAGTTCATCTCAAGGCTTCCCCAAGGATATGACACATCTGTGGGGGAGCGGGGCGTGCAGTTATCTGGAGGACAGAAGCAGCGGATAGCAATTGCAAGAGCAATAATTAAAGACCCTAGCATACTATTGTTAGATGAAGCTACAAGTGCATTGGATGCTGAATCTGAGCGTGTTGTTCAAGATGCGTTGGATCGTGTAATGGTAAACAGGACCACTATTGTTGTTGCTCATCGTCTTTCAACAATTAAAGATGCAGATCTCATAGCTGTGGTGAAGAATGGCGTCATTGCAGAACAGGGAAAACATGATCAATTGCTTGACATTAGAGATGGTGCCTATGCATCCTTGGTGAAACTGCATATGGCTTCCTCTTAG___TTGAG

Fln Alignment:

Contig10909___SVIASFYEPPHKLRKDASFWALMYIVLATTCLVMAPTQMYSFAVAGGRLVRRIRSLTFSKVVYQEIGWFDDSENSSGAIGARLSTDAATVRSMVGDALSLVVQNISTILAGVLIAFSANWKXXXXXXXXXXXXXXXXWVQVKFMQGFSGDSKVMYEEASQVANDAVGSIRTVASFSAEDKVMSLYNEKCSVPLKGGIRQGIISGLGLGIANFLLFSVYAVSFWVGARMVEHGETTFRKVFRVFFALTMAAMGVSQSAGLAPDIAKVKSSVNSVFEILDRKSKIDASDVSGTTLENVKGDIEFRHVSFKYATRPDIQIFRDLSLSVHSGKTVALVGESGSGKSTVISLLERFYDPDSGRILLDGVEIQKLQLKWLRQQMGLVSQEPILFNDSIRANIAYGKEGIVSDEQIIIAAEASNAHKFISRLPQGYDTSVGERGVQLSGGQKQXXXXXXXXXKDPSILLLDEATSALDAESERVVQDALDRVMVNRTTIVVAHRLSTIKDADLIAVVKNGVIAEQGKHDQLLDIRDGAYASLVKLHMAS
E6Y0T0_______________SVIKVFYEPPHELRKDAKFWALMFIVLAVTCFIVAPTQMYCFSIAGGRLVQRIRSLTFSKVVYQEISWFDDNENSSGAISARLSTDAATVRSLVGDALSLVVQNIATIIAGIVISFTANWLLALLILAIVPLLGLQGYMQVKFMTGFTADAKLVYEEASQVANDAVGSIRTVASFCAEDKVISLYNEKCSAPLKSGVKQGIIAGLGLGFSNFVMFTQYALSFWVGARLVEDGKTTFDKVFKVFFALSMAAAGISQSAGLSPDLAKAKSSINSVFKILDRPSKIDANDESGTILDNVKGDIEFQHVSFKYPTRPDVQIFRDLCLFVHSGKTVALVGESGSGKSTAIALLERFYDPDSGRIFLDGVEIRQLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKEGAVTDEQIIAAAEAANAHKFISSLPQGYNINVGERGVQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERIVQDALDRVKVNRSTIVIAHRLSTIKDADLIAVVKNGKIAEQGKHDELLKKRNGAYASLVQLHKSS

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
259	80			20	0.995493
260		80		20	0.995493
328	33		66		1.0
358	20			80	0.995493
359	20			80	0.995493
361		80	20		0.995493
362	80			20	0.995493
521		72		27	1.0
1199	83		16		0.994512
1200			16	83	0.994512
1552	10	90			0.90298
1650	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain