SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene10887

Length: 2863 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene10887
ATGGGGCTCGTGACCTTGCTTTCCCTCCTCTCCTTTTATCAGATGTTTCCATAATCGTCTGCCTTGGCTGTCTTTTAACTCACACTCACGCCCGGGCTTGTAAAAATCGATTTGGTTTTGACTGCCACAAGTTTTCAGATTCGAGAGAGGGGGAGACAGAGCGAGAAGGAAGAGTTGGCAACAGTCTTTTGACTTACCTTCCTTCTCCCTCTTTCTCTCTAGACGTGAAGAAAGGCCTTGCTCGCCCTTCACGTCTTCCAAAATTTGTCTTTTACCATATCATTTCAACGAACAGTTCGCTTGGAGACAACAGTGGAAGAGATTTTTCCAGGTGTACGACAGGCAAGAAAATATCGGGGCCTTGACTAGCGGAGGTAGTGATACATCTGTGCGGGGCTGGGCGGGCTTCAGAATCTAGAGTGGCAAGAAGCAGAAGCAAGAAGATATACTAGAAATTAGATGAATTGAATCCTGGCTTCAAGATTGTTGTGGAAGAAAATGGGAAAAGGATAGTAAGTAACTAAGAAATATTGGGGTGGGGAAGGGGAGATTGAAACATCGTATGTGGAGGAGGAGCTGTAGCAGCCAGCAAAGATGCTGGAAGGCTTAATGGTTCATGCAAGGCATCTGCCCTCTTTAATAGCAAAACCCTCCTTCACTTCTTCTGGTCTCTCTCTTGCGCCGCCGAGACGTGTTGAAGACCGTCACAACAGCCAAACGGCGGAAACAGATCTGGAGAAAATGAGAGAAGAGGAATTTGAGAGTAAATCCGGAAGCGAAAACATCGAGGGAGCATCTGGAGAAGAGCAGGATGTGGATCCACGGTCACGCAAAAAACGATACCATCGGCATACCCAGCATCAGATTCAAGAGTTGGAGATGTTCTTTCGAGAGTGTCCGCATCCTGATGATAAACAGAGGCAGGAACTCAGTCGGCGACTTTGCCTCGAGCCACGCCAAATTAAATTCTGGTTCCAGAACAAACGTACTCAAATGAAGGCTCACCATGAACGGCAGGATAATATTATGCTAAAATCAGAGAATGAGAAACTTCGTCTGGATAACATGAGGTACCGAGATGCTTTGAGCAGCATAACATGTCCCAACTGTGGAGGTCCGGCCACATTGGGAGAGATTTCATTTGATGAGCAGCAGTTACGTATCGAGAACGCCAAGCTCAGAGAAGAGGTCGAACGCATTTCGGGCATTGCTGCAAAATACGTGGGGAAGCCTCTGCCATCTCCAGTAACACGTCTTAATACACTTTCTTCATCGACATTAGATCTGGGTAGCGGAGGAGGGTCATCGTGCCTGGGAGATTTTCATGGAACAGCTGGCGGGGATATCGTTAGCAGGCACGTTGGGTTGGCAGAGTCCGAGAAGCCAATGGTGGTAGAGGTAGCTGTGGCAGCTATGGAGGAGTTAGTCCAAATGGCACAAGTGTGCGACCCTCTTTGGACTACCCGTTTTGAGGATGGATGTGAAATTCTGTGCCAGGAGGAGTACACTCGAATGTTTCCTCGTGGCAACTTAGGTTCGACTTCTAGATCGCCCTATGGAGTGAAGACACAAGAAGCGTCTCGTGATACTGCCCTTGTGATCATGAGCTCAATCAATCTGGTCGAGACAATGATGGATGTGGAACCAATGGTCAAGTATGTTTTCGTGGAGAGAGAGCTCGTGCACCGTATTTACGATAAGTTGGTAAGCAGTGGTATGGCGTTCGGCGCGAAACGGTGGCTATCAACTCTGGAAAGGCAGTGTGAACGTTTGGCCAGTATGCTAGCTTGCAATATACCTGCAAGAGACCTTGGAGTTATATCGAATCCGGAAGGGAGAAGAAGCATGCTTAGTTAGCGGAGCGCGTGACGAATAGTTTCTGTGCTGGTGTGAGTGCCTCTAATGCACACACTTGGACAACTCTTTCTGGTAGCGGTGCTGAAGATGTTCGTGTTATGACTCGCAAGAGCGTAGATGACCCAGGCAGGCCTCCAGGCATTGTCTTAAGCGCAGCAACCTCCTTCTGGCTTCCTGCACCTCCTATGCGAGTCTTTCAATTCCTGCGTGATGAAAACTTGAGGAACGGGTGGGACATTCTATCCAATGGTGGCTTAGTCCAAGAAATGGCGCATATCGCCAACGGTCAAGATCCTGGAAATTGTGTCTCTCTTTTGCGTGTCAACAACTTGAATTCGAATCAGGGTAACATGCTTATTCTCCAGGAGAGCTGCACTGATGTATGTGGCTCTTACGTTATTTACGCTCCCGTTGATATAGTGGCCATGAATGTCGTTCTCAACGGTGGTGATCCCAACTACGTGGCTCTTTTACCATCGGGTTTTGCTATTCTGCCTGATGGCACACAGTCGAGTTTGGGTAGCAGTGTCATTAATGATAAAATCTCCAGTGGCTCGTTGTTGACTGTGGCTTTCCAGATTTTAGTCGACTCTGTGCCAACAGCAAAGCTATCTTTAGGGTCGGTTGCAACTGTCAACAGCCTCATATCCTGTACAGTTGACCGAATTAAGACGGCTCTGAACTGTGAAAACGCTTGATTGAACAAGGGCCCTCTTGTTTCTCGTTTCGTTTTCGTGTGTGTGAAATGTCAAAACGCTGTCTTTTGCTTGGCATTTCACCCACAAAAATAAACTGAAACTGGATTTCTTACTGTATTCATAAATGGAAAGGGAAGTCAAGAGCGCACCACAGACACCCCTTGCCTTGTGGTAAAGTAACAAGGTAGTTTCAAACTCCTACTTAACCTCAACGCAAGGATAGTGGTTCGGGTATTGACTTCCCTGCGTTAATTTTCCAATGGATAACATTAATAGACTGGTACATATGTATGCTTGACCTAACCCAA

Ace file of the UniGene sp_v2.0_unigene10887

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	homeobox-leucine zipper protein HDG2 [Arabidopsis thaliana] ref\|NP_849596.1\| homeobox-leucine zipper protein HDG2 [Arabidopsis thaliana] ref\|NP_001184911.1\| homeobox-leucine zipper protein HDG2 [Arabidopsis thaliana] sp\|Q94C37.1\|HDG2_ARATH RecName: Full=H	-	-	75%
FL-Next	tr=Homeobox 1; Picea abies (Norway spruce) (Picea excelsa).	-	-	61%
Blast2go	homeobox-leucine zipper protein hdg2	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	trichome morphogenesis	GO:0010090	Biological Process	86%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	86%
Blast2go	transcription regulator activity	GO:0030528	Molecular Function	86%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	86%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	86%
Blast2go	nucleus	GO:0005634	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Sma3	Helix-turn-helix motif	IPR000047	-	-
Sma3	Homeodomain	IPR001356	-	-
Sma3	Lipid-binding START	IPR002913	-	-
Sma3		IPR012287	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: Q9FR59

Fln msg: Overlapping hits, possible frame ERROR between 1836 and 1743, your sequence is shorter than subject: 654 - 763. Was predicted as Complete, but is very much shorter than de subject

Fln protein: MLEGLMVHARHLPSLIAKPSFTSSGLSLAPPRRVEDRHNSQTAETDLEKMREEEFESKSGSENIEGASGEEQDVDPRSRKKRYHRHTQHQIQELEMFFRECPHPDDKQRQELSRRLCLEPRQIKFWFQNKRTQMKAHHERQDNIMLKSENEKLRLDNMRYRDALSSITCPNCGGPATLGEISFDEQQLRIENAKLREEVERISGIAAKYVGKPLPSPVTRLNTLSSSTLDLGSGGGSSCLGDFHGTAGGDIVSRHVGLAESEKPMVVEVAVAAMEELVQMAQVCDPLWTTRFEDGCEILCQEEYTRMFPRGNLGSTSRSPYGVKTQEASRDTALVIMSSINLVETMMDVEPMVKYVFVERELVHRIYDKLVSSGMAFGAKRWxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKKHA*LAERVTNSFCAGVSASNAHTWTTLSGSGAEDVRVMTRKSVDDPGRPPGIVLSAATSFWLPAPPMRVFQFLRDENLRNGWDILSNGGLVQEMAHIANGQDPGNCVSLLRVNNLNSNQGNMLILQESCTDVCGSYVIYAPVDIVAMNVVLNGGDPNYVALLPSGFAILPDGTQSSLGSSVINDKISSGSLLTVAFQILVDSVPTAKLSLGSVATVNSLISCTVDRIKTALNCENA*

Protein Length: 655

Fln nts: ATGGGGCTCGTGACCTTGCTTTCCCTCCTCTCCTTTTATCAGATGTTTCCATAATCGTCTGCCTTGGCTGTCTTTTAACTCACACTCACGCCCGGGCTTGTAAAAATCGATTTGGTTTTGACTGCCACAAGTTTTCAGATTCGAGAGAGGGGGAGACAGAGCGAGAAGGAAGAGTTGGCAACAGTCTTTTGACTTACCTTCCTTCTCCCTCTTTCTCTCTAGACGTGAAGAAAGGCCTTGCTCGCCCTTCACGTCTTCCAAAATTTGTCTTTTACCATATCATTTCAACGAACAGTTCGCTTGGAGACAACAGTGGAAGAGATTTTTCCAGGTGTACGACAGGCAAGAAAATATCGGGGCCTTGACTAGCGGAGGTAGTGATACATCTGTGCGGGGCTGGGCGGGCTTCAGAATCTAGAGTGGCAAGAAGCAGAAGCAAGAAGATATACTAGAAATTAGATGAATTGAATCCTGGCTTCAAGATTGTTGTGGAAGAAAATGGGAAAAGGATAGTAAGTAACTAAGAAATATTGGGGTGGGGAAGGGGAGATTGAAACATCGTATGTGGAGGAGGAGCTGTAGCAGCCAGCAAAG_-_ATGCTGGAAGGCTTAATGGTTCATGCAAGGCATCTGCCCTCTTTAATAGCAAAACCCTCCTTCACTTCTTCTGGTCTCTCTCTTGCGCCGCCGAGACGTGTTGAAGACCGTCACAACAGCCAAACGGCGGAAACAGATCTGGAGAAAATGAGAGAAGAGGAATTTGAGAGTAAATCCGGAAGCGAAAACATCGAGGGAGCATCTGGAGAAGAGCAGGATGTGGATCCACGGTCACGCAAAAAACGATACCATCGGCATACCCAGCATCAGATTCAAGAGTTGGAGATGTTCTTTCGAGAGTGTCCGCATCCTGATGATAAACAGAGGCAGGAACTCAGTCGGCGACTTTGCCTCGAGCCACGCCAAATTAAATTCTGGTTCCAGAACAAACGTACTCAAATGAAGGCTCACCATGAACGGCAGGATAATATTATGCTAAAATCAGAGAATGAGAAACTTCGTCTGGATAACATGAGGTACCGAGATGCTTTGAGCAGCATAACATGTCCCAACTGTGGAGGTCCGGCCACATTGGGAGAGATTTCATTTGATGAGCAGCAGTTACGTATCGAGAACGCCAAGCTCAGAGAAGAGGTCGAACGCATTTCGGGCATTGCTGCAAAATACGTGGGGAAGCCTCTGCCATCTCCAGTAACACGTCTTAATACACTTTCTTCATCGACATTAGATCTGGGTAGCGGAGGAGGGTCATCGTGCCTGGGAGATTTTCATGGAACAGCTGGCGGGGATATCGTTAGCAGGCACGTTGGGTTGGCAGAGTCCGAGAAGCCAATGGTGGTAGAGGTAGCTGTGGCAGCTATGGAGGAGTTAGTCCAAATGGCACAAGTGTGCGACCCTCTTTGGACTACCCGTTTTGAGGATGGATGTGAAATTCTGTGCCAGGAGGAGTACACTCGAATGTTTCCTCGTGGCAACTTAGGTTCGACTTCTAGATCGCCCTATGGAGTGAAGACACAAGAAGCGTCTCGTGATACTGCCCTTGTGATCATGAGCTCAATCAATCTGGTCGAGACAATGATGGATGTGGAACCAATGGTCAAGTATGTTTTCGTGGAGAGAGAGCTCGTGCACCGTATTTACGATAAGTTGGTAAGCAGTGGTATGGCGTTCGGCGCGAAACGGTGGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAAGAAGCATGCTTAGTTAGCGGAGCGCGTGACGAATAGTTTCTGTGCTGGTGTGAGTGCCTCTAATGCACACACTTGGACAACTCTTTCTGGTAGCGGTGCTGAAGATGTTCGTGTTATGACTCGCAAGAGCGTAGATGACCCAGGCAGGCCTCCAGGCATTGTCTTAAGCGCAGCAACCTCCTTCTGGCTTCCTGCACCTCCTATGCGAGTCTTTCAATTCCTGCGTGATGAAAACTTGAGGAACGGGTGGGACATTCTATCCAATGGTGGCTTAGTCCAAGAAATGGCGCATATCGCCAACGGTCAAGATCCTGGAAATTGTGTCTCTCTTTTGCGTGTCAACAACTTGAATTCGAATCAGGGTAACATGCTTATTCTCCAGGAGAGCTGCACTGATGTATGTGGCTCTTACGTTATTTACGCTCCCGTTGATATAGTGGCCATGAATGTCGTTCTCAACGGTGGTGATCCCAACTACGTGGCTCTTTTACCATCGGGTTTTGCTATTCTGCCTGATGGCACACAGTCGAGTTTGGGTAGCAGTGTCATTAATGATAAAATCTCCAGTGGCTCGTTGTTGACTGTGGCTTTCCAGATTTTAGTCGACTCTGTGCCAACAGCAAAGCTATCTTTAGGGTCGGTTGCAACTGTCAACAGCCTCATATCCTGTACAGTTGACCGAATTAAGACGGCTCTGAACTGTGAAAACGCTTGA___TTGAACAAGGGCCCTCTTGTTTCTCGTTTCGTTTTCGTGTGTGTGAAATGTCAAAACGCTGTCTTTTGCTTGGCATTTCACCCACAAAAATAAACTGAAACTGGATTTCTTACTGTATTCATAAATGGAAAGGGAAGTCAAGAGCGCACCACAGACACCCCTTGCCTTGTGGTAAAGTAACAAGGTAGTTTCAAACTCCTACTTAACCTCAACGCAAGGATAGTGGTTCGGGTATTGACTTCCCTGCGTTAATTTTCCAATGGATAACATTAATAGACTGGTACATATGTATGCTTGACCTAACCCAA

Fln Alignment:

Contig10887___MLEGLMVHARHLPSLIAKPS----FTSSGLSLAPPRRVEDRHN-SQTAETDLEKMREEEFESKSGSENIEGASGEEQDVDPRSRKKRYHRHTQHQIQELEMFFRECPHPDDKQRQELSRRLCLEPRQIKFWFQNKRTQMKAHHERQDNIMLKSENEKLRLDNMRYRDALSSITCPNCGGPATLGEISFDEQQLRIENAKLREEVERISGIAAKYVGKPL----PSPVTRXXXXXXXXXXXXXXXXXXXXXXFHG-TAGGDIVSRH-VGLAESEKPXXXXXXXXXXXXXXXXXQVCDPLWTTRFEDGCEILCQEEYTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxEKKHA*LAERVTNSFCAGVSASNAHTWTTLSGSGAEDVRVMTRKSVDDPGRPPGIVLSAATSFWLPAPPMRVFQFLRDENLRNGWDILSNGGLVQEMAHIANGQDPGXXXXXXXXXXXXXXQGNMLILQESCTDVCGSYVIYAPVDIVAMNVVLNGGDPNYVALLPSGFAILPDGTQ-SSLGSSVINDKISSGSLLTVAFQILVDSVPTAKLSLGSVATVNSLISCTVDRIKTALNCEN
Q9FR59_______________MPAGFIIPARHVPPLMARHTKAGYTTSSGLSLAQPNMAEGQFDMSQTADSEIAKIREEEFESKSGSDNVEGASGEDQDGERRPRKKRYHRHTQHQIQEMEMFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRSENEKLRSENMRYREALNNASCPNCGGPAALGEMSFDEQQLRMENARLREEIDRISGIAAKYVGKPLLSFGPSPLSSIPRSNLDLAVGSYGVQPNIGPDIYGSSSGGEIGNRSLVGPTEGEKPMVVELAVAAMEELVRMAQLGEPLWTSHPEDSTDILNEDEYIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRKSILKLAERMVTSFCAGVSASTAHTWTTLSGSGAEDVRVMTRKSIDDPGRPPGIILSAATSLWLPVPPKKVFDFLRDENSRNEWDILSNGGLVQEVDHIANGQDPGNCVSLLRVNTVNSNQSNMLILQESCTDASGSFVIYAPVDIVAMNVVLSGGDPDYVALLPSGFAILPDSPKCMAVTNSGINDLGTGGSLLTVAFQILVDSVPTAKLSLGSVATVNSLISCTVDRIKAAVMREN

SNPs (tot: 46)

Position	A %	C %	G %	T %	Probability
456	83		16		0.994512
457		83	16		0.994512
458			16	83	0.994512
1078			87	12	0.992554
1154		12		87	0.992554
1359	25		75		0.996473
1654	50			50	1.0
1655	50			50	1.0
1656	50	50			1.0
1658	50		50		1.0
1659	50			50	1.0
1660			50	50	1.0
1664		50		50	1.0
1665	50		50		1.0
1667	50		50		1.0
1668		50		50	1.0
1673	50			50	1.0
1674			50	50	1.0
1675	50			50	1.0
1676	50	50			1.0
1680		33	66		0.997452
1683			60	40	1.0
1684	60	40			1.0
1687			60	40	1.0
1689			60	40	1.0
1698	75			25	0.996473
1701	25		75		0.996473
1702		25		75	0.996473
1704		25		75	0.996473
1706			25	75	0.996473
1707	75		25		0.996473
1733	33		66		0.997452
2248	25	75			0.996473
2251	75		25		0.996473
2252			25	75	0.996473
2418			14	85	0.993533
2419		85		14	0.993533
2425	14		85		0.993533
2431			14	85	0.993533
2433		14		85	0.993533
2436	85			14	0.993533
2438	14			85	0.993533
2439		14	85		0.993533
2441		14	85		0.993533
2442	14		85		0.993533
2467		14		85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain