SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene10856

Length: 1856 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene10856

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	can of worms 1 protein [Arabidopsis thaliana] emb\|CAE82297.1\| can of worms 1 [Arabidopsis thaliana]	-	-	48%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	71%
Blast2go	protein	-	-	70%

Source	GOs	Term	Type	Identity
Blast2go	root hair cell tip growth	GO:0048768	Biological Process	70%
Blast2go	transport	GO:0006810	Biological Process	70%
Blast2go	phosphatidylinositol transporter activity	GO:0008526	Molecular Function	70%
Blast2go	intracellular	GO:0005622	Cellular Component	70%

Source	InterPros	Term	Type	Identity
Sma3	Serine/threonine dehydratase, pyridoxal-phosphate-binding site	IPR000634	-	-
Sma3	Cellular retinaldehyde binding/alpha-tocopherol transport	IPR001071	-	-
Sma3	CRAL-TRIO domain	IPR001251	-	-
Sma3	Diguanylate phosphodiesterase, EAL domain	IPR001633	-	-
Sma3		IPR008273	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: A9SNY0

Fln msg: your sequence is longer than subject: 330 - 282

Fln protein: MYSKLRDAHLVGKFTSALSRPVLDLGHCGSRGESSVKPEEDSEEDNGMGGASAAHVDDRTPAHEEALRKLKVMLKESGLMRSKDTELDLLRYLRARSFDVGKARSMYETMVEWRQEIGADTIKETFQFPERKRVKELYPHFHHKIDKFGRPVYIERLGQLQLDELLKVTTLDRMLQYHVKEWEILIDWKFPACSRKAGRTINQSLTILDLKGVTVKHMSKQVRHFIQKISKMDQDYYPEYLGKMIIVNSPTTFKAIWSIIKPWLDKRTQKKIEVHGSNYAHKLLELVDAENLPEFLGGSCKCPGGCENSDAGPWNDIPANTTFNEAAKP*

Protein Length: 331

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTTTTGCTTCTGTTAGTTCTAATAAGGTATCGTGGCTTTCATGCTAAAATGCTGGGCAAACTTCTTGATTTCTTGAAGTAAAAGCAATCCGATAGAGTTTTTCCCTTTTTTAGATTCTTTCTTTTTGGATGGTTTGGCAGCATTCATAAATGCATGGAGTTTAATCCACTCCTTGGCTTTTGGGTTCTGGCTCGCTGTGATGAATTTGGCCGTTTCACTACTGCCCATTAGCTTTTTCTTTAATCTGTGATTAATCCTGCGGTTCTCCTTACGTTACAGCCATTGATTCCCATTTCGGAAGGATTCTTGGACCTGCATATAACATCTGTGTGGTGGAAGGCGTATTCGTGTTTTGGACAAGAATTGATTGTTTTGCGCGTGAAATGGTATTTTCAGTTGTTTTCTCTGTGTGAGAGAAGGGGCCTAAACCAGATTTTAAGCTCTGGAATAGACTTTTTACTCTCGAGAGCACAACAGGAACGGACAACTATAGACCTATTTCTGACAGTTTCGTTTGCGGTCAATGCAGCTCCTTTGTCTCTAAAGTAGCCTTGCAGATATTCGAAAGGTTTAAATAGTATTATCGGAGGCCTTGTAATTTGTGTCAGATATAAA_-_ATGTATTCTAAGCTGAGGGATGCCCATTTGGTGGGGAAATTTACATCGGCCCTGTCTCGGCCTGTGTTGGATCTGGGGCACTGCGGTTCCCGGGGTGAGAGCAGCGTGAAGCCTGAGGAAGACAGTGAGGAAGATAACGGTATGGGTGGAGCTTCTGCTGCTCATGTGGACGATCGAACTCCCGCCCATGAGGAGGCTTTGAGGAAGCTCAAAGTGATGTTGAAGGAGTCGGGGCTTATGCGCAGCAAAGATACGGAGCTGGATCTGTTGAGGTATCTGAGGGCTCGTTCCTTCGATGTTGGTAAGGCCAGGTCCATGTATGAGACCATGGTTGAATGGCGCCAAGAGATCGGGGCTGATACTATCAAAGAGACCTTCCAATTCCCTGAAAGGAAGAGAGTGAAGGAGCTTTATCCTCACTTTCATCACAAAATAGACAAGTTTGGGCGCCCTGTGTATATAGAAAGGCTTGGTCAGCTGCAATTAGACGAGCTGCTGAAGGTTACAACACTGGATCGAATGCTTCAGTATCATGTCAAAGAATGGGAAATTCTTATTGATTGGAAATTCCCTGCTTGTTCCAGGAAGGCTGGAAGGACCATCAATCAATCACTAACCATTTTGGATCTTAAAGGAGTGACAGTGAAGCATATGAGCAAGCAAGTTCGGCACTTCATTCAGAAGATATCAAAGATGGATCAAGACTATTATCCTGAGTACCTTGGAAAAATGATAATTGTTAACTCTCCCACAACCTTTAAGGCAATATGGTCTATCATAAAACCATGGCTTGATAAAAGAACCCAAAAGAAAATAGAAGTACATGGCTCCAACTATGCACATAAACTTCTTGAGCTGGTAGACGCGGAGAATCTGCCAGAATTTCTAGGAGGATCTTGCAAATGCCCCGGTGGGTGTGAGAATTCTGATGCTGGACCATGGAATGATATTCCTGCCAACACTACATTCAATGAGGCCGCAAAGCCCTGA___GGAACGTAATAGAAGTAACTTGATATGACTCTAACCTTGAACCTTGATCTAAATATTTTGGAGTAGCTTGCTCCTCTGATCTAATGGAAAAAAAAAGGTGAACTTGCAGAGGAATGACAAATCTAACCTGCTAGCATTCTCAAGCAAGGCTGGATTTAATGTTTTTGTTAACGGTTATTTTAGACTATTAATGAACAAATTTATTTTCTGATAATATATTTTTTG

Fln Alignment:

Contig10856___TPAHEEALRKLKVMLKESGLMRSKDTELDLLRYLRARSFDVGKARSMYETMVEWRQEIGADTIKETFQFPERKRVKELYPHFHHKIDKFGRPVYIERLGQLQLDELLKVTTLDRMLQYHVKEWEILIDWKFPACSRKAGRTINQSLTILDLKGVTVKHMSKQVRHFIQKISKMDQDYYPEYLGKMIIVNSPTTFKAIWSIIKPWLDKRTQKKIEVHGSNYAHKLLELVDAENLPEFLGGSCKCPGGCENSDAGPWNDIP
A9SNY0_______________TQSQHDTLTKFREILSEQGLLRKRDDDHTLLRFLRARGFDIPKAKAMFEVMLEWRAEIGADTIRETFEFPERKAVRDLYPHFHHKTDKLGRPVYIERLGQLNVDELLKLTTMDRMLLYHVKEWEVLLNSKFPACSEKAGTCVSQSLAILDLKGVNMKHMSKQVRHFIQKITKVDQDYYPECLGKMFIVNAPTAFKAMWAVIKPWLDKRTQKKIELHGGHFSSRLLELVDCENLPEFLGGSCNCLGGCENSDAGPWNEAP

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
398		11	88		0.923564
421			12	87	0.992554
434		87	12		0.992554
648	80	20			0.999996
649			20	80	0.999996
654	77		22		0.999999
656		22	77		0.999999
661			75	25	1.0
664	75	25			1.0
668	12	75		12	0.975346
670	87			12	0.992554
671		25		75	1.0
672	12			87	0.992554
673		12		87	0.992554
674	12		87		0.992554
925	12		75		0.975346
1263	87		12		0.992554
1265		12		87	0.992554
1266			12	87	0.992554
1271		12		87	0.992554
1275	87		12		0.992554
1276	87		12		0.992554
1277	87	12			0.992554
1278			87	12	0.992554
1280	87			12	0.992554
1281		12	87		0.992554
1282	12			87	0.992554
1283		12	87		0.992554
1284	87			12	0.992554
1508		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain