SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene10854

Length: 794 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene10854

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Golgin-84, putative n=1 Tax=Ricinus communis RepID=B9RKJ0_RICCO	-	-	63%
FL-Next	sp=Golgin-84; Oryza sativa subsp. japonica (Rice).	-	-	47%
Blast2go	golgin candidate 1	-	-	68%

Source	GOs	Term	Type	Identity
Blast2go	chloroplast fission	GO:0010020	Biological Process	68%
Blast2go	binding	GO:0005488	Molecular Function	68%
Blast2go	catalytic activity	GO:0003824	Molecular Function	68%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	68%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	68%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3		IPR015706	-	-

Full-Lengther Next Prediction

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
35	16	83			0.994512
36	16		83		0.994512
40		83	16		0.994512
41	16	83			0.994512
43			16	83	0.994512
44	16		83		0.994512
45			83	16	0.994512
46	16	83			0.994512
49		16		83	0.994512
50	16	83			0.994512
52		83	16		0.994512
53	16			83	0.994512
163		16		83	0.994512
242	16		83		0.994512
251	83		16		0.994512
327	50		50		1.0
374	50			50	1.0
400	50	50			1.0
415		75		25	0.996473
418	50		50		1.0
491		80		20	0.995493
610	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain