SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene10838

Length: 825 nt

Origin of reads: Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene10838

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Heat shock factor protein HSF8, putative n=1 Tax=Ricinus communis RepID=B9SNT1_RICCO	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	heat shock factor	-	-	91%

Source	GOs	Term	Type	Identity
Blast2go	response to stress	GO:0006950	Biological Process	91%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	91%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	91%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	91%
Blast2go	protein binding	GO:0005515	Molecular Function	91%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	91%
Blast2go	nucleus	GO:0005634	Cellular Component	91%

Source	InterPros	Term	Type	Identity
Sma3	Heat shock factor (HSF)-type, DNA-binding	IPR000232	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-

Full-Lengther Next Prediction

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain