SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene10835

Length: 1204 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene10835

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Myosin_tail_1 domain containing protein	-	-	2.0e-06	23%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Blast2go	uncharacterized protein	-	-	0.0	61%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	61%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	61%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	61%

Source	InterPros	Term	Type	e value	Identity
Sma3	Basic-leucine zipper domain	IPR004827	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
141	76	7		15	0.999983
146	76	7		15	0.999983
148			23	76	1.0
154		15		84	0.999986
178	38			61	1.0
239	10		90		0.90298
298		40		60	1.0
825	50		50		1.0
828	50		50		1.0
856		50	50		1.0
935		33		66	1.0
1138	60		40		1.0
1168	20		80		0.995493
1193	20	80			0.995493
1194	20	20			0.99255

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain