SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene10791

Length: 755 nt

Origin of reads: Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene10791

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative casein kinase [Oryza sativa Japonica Group] gb\|AAV59374.1\| putative casein kinase [Oryza sativa Japonica Group]	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	76%
Blast2go	casein kinase	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	87%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	87%
Blast2go	ATP binding	GO:0005524	Molecular Function	87%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	87%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	Cyclin, C-terminal	IPR004367	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3		IPR006670	-	-
Sma3	Cyclin, N-terminal	IPR006671	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Cyclin-like	IPR013763	-	-
Sma3	Translation elongation factor P/YeiP, conserved site	IPR013852	-	-
Sma3		IPR015706	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
115	14		85		0.993533
117	14	85			0.993533
118		85		14	0.993533
119	85			14	0.993533
160	25			75	1.0
163			75	25	1.0
219		85		14	0.993533
564			75	25	0.996473
565	75			25	0.996473
632	20			80	0.995493
633	20		80		0.995493
635			20	80	0.995493
659	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain