SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene10773

Length: 619 nt

Origin of reads: Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene10773 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Hydrolase, putative n=1 Tax=Ricinus communis RepID=B9RED8_RICCO	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	32%
Blast2go	protein	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Acid phosphatase.	EC:3.1.3.2	-	0.0	77%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Aminobenzoate degradation	00627		0.0	77%
Blast2go	Riboflavin metabolism	00740		0.0	77%

Source	GOs	Term	Type	Identity
Blast2go	metal ion binding	GO:0046872	Molecular Function	77%
Blast2go	acid phosphatase activity	GO:0003993	Molecular Function	77%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Sma3	Fibronectin, type III	IPR003961	-	-
Sma3	Metallophosphoesterase domain	IPR004843	-	-
Sma3	Purple acid phosphatase, N-terminal	IPR015914	-	-
Sma3		IPR017909	-	-

Full-Lengther Next Prediction

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
273		87		12	0.992554
346		11	88		0.923564
439	14	85			0.993533
536		85		14	0.993533
538			14	85	0.993533
539		85		14	0.993533
540		85	14		0.993533
541	71		28		1.0
542	85	14			0.993533
544			14	85	0.993533
545		14		85	0.993533
549	14	85			0.993533
550	85		14		0.993533
551			14	85	0.993533
556		85	14		0.993533
558	85		14		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain