SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene10752

Length: 1591 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene10752 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	allene oxide cyclase [Pisum sativum]	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	allene oxide cyclase	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Allene-oxide cyclase.	EC:5.3.99.6	-	0.0	84%

Source	KEGGs	Term	Identity
Blast2go	alpha-Linolenic acid metabolism	00592	84%
Blast2go	Biosynthesis of plant hormones	01070	84%
Blast2go	Metabolic pathways	01100	84%

Source	GOs	Term	Type	Identity
Blast2go	jasmonic acid biosynthetic process	GO:0009695	Biological Process	84%
Blast2go	allene-oxide cyclase activity	GO:0046423	Molecular Function	84%
Blast2go	chloroplast	GO:0009507	Cellular Component	84%

Source	InterPros	Term	Type	e value	Identity
Sma3	Allene oxide cyclase	IPR009410	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABJ9

Fln msg:

Fln protein: MAAAGTATSILSKSSLGNNKGLVRLVRSNSEINNIGLRPATCFNPLKGEIFGA*LSLTLLKGEIFGAQLAPKMVMTERQIQFDNSSLVRVRAEAKVSMSLRHRVKANAASAQGPPSSSVQELHVYEINELDRGSPAYLRLSQKPVNNLGDLVPFSNKLYSGNLQKRIGITAGLCILIQHFPEKNGDRYEAIYSFYFGDYGHISVQGPYLTYEESYLAITGGSGIFSGVRGQVKLKQIVFPFKLFYTFYLEGIPSLPETLLGEPVFPTPDVEPSPAAKNVEAHACLPNYTQ*

Protein Length: 292

Fln nts: ATTTGTATACTCAGTATTTTTCACGTGCCTGTGGACTTTATAGATGAATGGTACCCACTCCGGATTTCTAGGAAAGACCCTGGCATCTTTGGATGGAAATATGTCTTTGGGCAGCGGACCAGAGCAGACCAGCGATATATTTGTGCACTGCTAGACCCAGTTGCCTGTACCCTTTGGAAGCCCTCCTTTGTTTTTCTTAGTGTTTGCCCTACCCTGTATTTAGCTTCGTCTTCTGCGCTCCTTTAGATCTTCTATCTCCCCCTCCATCGTCATCTCAAGCAAAGGAGACATCCTCAGGGTGGTTCTTGTTTCTGATTCTGATTCTGATTCATCATCTCCCTGAACTGAATTCACCCCCCACCCCATCCC_-_ATGGCTGCTGCTGGCACTGCCACCTCGATCTTATCAAAATCATCCTTAGGAAACAACAAAGGCCTGGTTCGATTGGTTCGTTCAAACTCAGAGATCAACAATATAGGCTTAAGACCTGCTACTTGTTTTAACCCTTTAAAGGGTGAGATTTTTGGGGCATAGTTGTCTCTAACTCTGTTAAAGGGTGAGATTTTTGGGGCACAGTTGGCTCCAAAGATGGTGATGACTGAGAGGCAAATCCAGTTTGACAACTCCTCTCTGGTGCGAGTGCGGGCAGAAGCAAAGGTATCAATGTCACTTCGACATCGAGTCAAAGCCAACGCTGCTTCTGCTCAAGGCCCTCCAAGCAGCTCTGTGCAGGAATTACATGTGTATGAGATCAATGAGTTGGACAGAGGGAGCCCTGCTTACCTTCGTCTGAGTCAGAAGCCCGTCAATAATCTGGGAGATCTAGTGCCATTTAGCAACAAGTTGTACAGTGGCAATCTGCAGAAACGTATAGGTATAACAGCTGGGCTCTGTATCCTTATCCAGCATTTTCCTGAGAAGAACGGAGATCGTTATGAAGCAATCTACAGCTTTTACTTCGGAGATTATGGCCATATTTCTGTGCAGGGGCCTTACCTTACATATGAGGAATCATACCTAGCAATTACTGGGGGTTCTGGCATATTCAGTGGAGTTCGTGGGCAAGTAAAGTTAAAACAGATTGTCTTTCCTTTCAAGTTATTCTACACTTTTTACTTAGAGGGCATTCCAAGCCTGCCCGAAACTCTGCTGGGTGAGCCTGTATTTCCAACACCGGATGTGGAGCCATCTCCCGCAGCAAAGAATGTAGAAGCTCATGCCTGCTTGCCCAACTATACCCAGTAA___TTAACTTACTTTACCTGCAATGAATAACAGGCCTGCAACCCTAAATAAATAATATATTCTTAGTAATGTGTTTTTAATTCACTGCTGGTAGTGGTCAGGGTATAATGTCAGCCAAGGTACAAGAAAATAGAGGGCAGGTTCATGTTGCTTGACCTTCACCTTCATCGCTCTTTTCAATATGTACCTTGACTTTGTGAATCCACTATCACTATATATCTTATGTGAAGATGATGTATCAAATGTTAATTAAACATATATATATATTTGGAGTATGCTAAATCTGGAGCAGAATGGAGTAATCTACATGTAATAGATAGCGTAATCGTCAATCAGGTCTCTAAGAAGGTGG

Fln Alignment:

Contig10752___SILSKSSLGNNKGLVRLVRSNSEINN---IGLRPATCFNPLKGEIFGA*LSLTLLKGEIFGAQLAPKMVMTERQIQFDNSSLVRVRAEAKVSMSLRHRVKANAASAQGPPSSSVQELHVYEINELDRGSPAYLRLSQKPVNNLGDLVPFSNKLYSGNLQKRIGITAGLCILIQHFPEKNGDRYEAIYSFYFGDYGHISVQGPYLTYEESYLAITGGSGIFSGVRGQVKLKQIVFPFKLFYTFYLEGIPSLPETLLGEPVFPTPDVEPSPAAKNVEAHACLPNYT
D5ABJ9_______________SISLKSSLGNNKSLLQLVCSNSEGNNTNSIGFKPATCFK--------------LLKGEIFGAQLA-----TERQIQFDSSSLVRVRAGAEASISIRRRVKANASSVQGPPSGSVQELYVYEMNELDRGSPAYLRLSQKPVNHLGDIVPFSNKLYSGNLQKRLGITAGICILIQHFPEKNGDRYEAIYSFYFGDYGHISVQGPYLTYEESYLTITGGSGIFSGVHGQVKLKQIVFPFKLFYTFYLEGIPSLPEDLLGEPVSPTPDVEPSPSAKNEEPHACLPNYT

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
1421			81	18	0.999994
1424	18			81	0.999994
1425			20	80	0.999996
1433			80	20	0.999996
1434		20		80	0.999996
1435	90	10			0.90298
1437		10	20		0.999998
1439		20	70	10	0.999998
1444	42	57			1.0
1445			42	57	1.0
1465			14	85	0.993533
1466	85		14		0.993533
1468	85	14			0.993533
1469	14			85	0.993533
1471		14	85		0.993533
1473	14		14		0.984337
1480		20	80		0.995493
1482		40		60	1.0
1483	20	80			0.995493
1484		20		80	0.995493
1485		25	75		0.996473
1486	25		75		0.996473
1492		33		66	0.997452
1558		33		66	0.997452
1560	66	33			0.997452
1561		33		66	0.997452
1562	33	66			0.997452

SSRs (tot: 2)

Start position	End position	Sequence	Length
86	97	AT AT AT AT AT AT	12
1262	1282	GAATCA GAATCA GAATCA GAA	21

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain