SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene10729

Length: 1041 nt

Origin of reads: Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene10729 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Short chain alcohol dehydrogenase, putative n=2 Tax=Ricinus communis RepID=B9SLP2_RICCO	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	momilactone a synthase-like	-	-	70%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	70%
Blast2go	diterpene phytoalexin precursor biosynthetic process pathway	GO:0051504	Biological Process	70%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	70%
Blast2go	binding	GO:0005488	Molecular Function	70%

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Gibberellin regulated protein	IPR003854	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PSK1

Fln msg:

Fln protein: MRLEGKVAVITGGASGIGEASAKLFAENGAQVVIADIQDDLGNCLAKSLSPNACYFHCDVSKETDVSALVDYAVEKHGRLDIMFSNAGIPGGLFSSMADVTLDDFERVMSVNVRGAYLCTKHAARAMIGAKTRGSVVMTCSMASVMAMPNGPSYTASKHAVLGIMKSAAIDLAQHGVRVNCVSPAGVPTPMLIDAMKKSFPSFDKRSAEEMLEKTMELKGITLEAIDVAKCALFLCSDDARYVSGQNLVIDGAFTTCKGFSTANSMDFIPIKSFFDHLAAGSCSQSQNETNEHLPPQ*

Protein Length: 299

Fln nts: CGTCGTGACCTTGGCTGTCACTGCATATCCACCATCGGGCTTTGCACAGGCAGCAGACAAT_-_ATGAGGCTGGAGGGCAAGGTCGCTGTGATCACAGGAGGAGCTAGCGGCATAGGAGAGGCAAGCGCCAAGTTATTCGCGGAGAATGGAGCGCAAGTAGTAATTGCAGACATTCAGGACGACCTCGGAAATTGTTTGGCTAAATCTCTTTCTCCGAATGCCTGCTATTTCCACTGCGATGTGTCGAAGGAAACGGATGTATCGGCCCTGGTGGACTACGCGGTTGAGAAGCACGGGCGTCTCGACATAATGTTCAGCAACGCCGGGATCCCGGGCGGGCTATTCTCGTCCATGGCAGATGTGACTCTTGACGATTTTGAGAGGGTCATGTCGGTGAACGTGCGGGGGGCGTATCTGTGCACGAAGCACGCGGCTAGGGCGATGATCGGCGCCAAAACCAGAGGCTCCGTGGTTATGACATGCAGCATGGCGTCGGTGATGGCGATGCCCAACGGGCCTTCTTACACGGCGTCGAAGCACGCGGTGTTGGGGATTATGAAGTCGGCGGCCATCGATCTGGCGCAGCACGGCGTTCGGGTGAACTGCGTTTCTCCGGCGGGCGTGCCGACGCCCATGTTGATCGACGCCATGAAGAAAAGTTTCCCCTCTTTCGATAAACGATCCGCAGAAGAGATGCTGGAGAAGACGATGGAGCTGAAGGGTATCACTCTGGAAGCCATTGACGTTGCCAAGTGCGCCCTGTTTCTGTGCAGCGACGACGCCCGCTACGTCAGCGGCCAGAATCTGGTGATCGATGGGGCGTTCACGACTTGCAAAGGTTTCTCCACTGCAAATTCTATGGATTTTATTCCTATTAAATCATTCTTCGATCACTTAGCTGCGGGAAGTTGCAGCCAATCCCAAAACGAAACAAATGAGCACCTACCTCCTCAATAA___TCCCACGTTCTGTTACTGCGGTATCCCTTGCGTGCCTTTGCTCAGGTTATTTTAATAATTTCTCTTCAGGAATCCTAAAATATTTG

Fln Alignment:

Contig10729___MRLEGKVAVITGGASGIGEASAKLFAENGAQVVIADIQDDLGNCLAKSLSPNACYFHCDVSKETDVSALVDYAVEKHGRLDIMFSNAGIPGGLFSSMADVTLDDFERVMSVNVRGAYLCTKHAARAMIGAKTRGSVVMTCSMASVMAMPNGPSYTASKHAVLGIMKSAAIDLAQHGVRVNCVSPAGVPTPMLIDAMKKSFPSFDKRSAEEMLEKTMELKGITLEAIDVAKCALFLCSDDARYVSGQNLVIDGAFTTCKGFSTANSMDFIPIKSFFDHLAAGSCSQSQNETNEHLPPQ
C0PSK1_______________MRLKGKVAVITGGASGIGEASAKLFVENGAQVVIADIQDDHGNRLAQSLAPNACFFHCDVSKETDVSALVDYALEKHGRLDIVFSNAGIPGGLFSSMADVTLEDLERVISVNVRGAYLCTKHAARVMIGAKTRGSILLTSSMASVMAMPNGPSYTASKHAVLGIMKSAATDLAPHGIRVNCVSPAGVSTPMLIDAMKKSFPSFDKHCADEMLETTMELKGLTLEADDVAKSALFLCSDDARYISGHNLVIDGAFTSCKAFSTANSMDFLPIKSFFDRLAPASSKKIQSEMNGQLAPQ

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
176		23		76	1.0
186	76		23		1.0
234		69	30		1.0
237		69		30	1.0
252	30		69		1.0
254		66		33	1.0
267	33		66		1.0
282		66	33		1.0
289		72	27		1.0
291		72	27		1.0
320		20		80	0.999996
341			20	80	0.999996
342		80	20		0.999996
351	25	75			1.0
357		12		87	0.992554
760	85	14			0.993533
762		85	14		0.993533
796	28	71			1.0
799		83		16	0.994512
834	80	20			0.995493
835	80		20		0.995493
838	80			20	0.995493
852	80		20		0.995493
854			20	80	0.995493
886		20		80	0.995493
891			80	20	0.995493
892		80		20	0.995493
905	20		80		0.995493
923			80	20	0.995493
988		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain