SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene10725

Length: 1155 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene10725 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	metal-dependent phosphohydrolase HD domain-containing protein [Arabidopsis thaliana] gb\|AAK63855.1\|AF389282_1 AT5g40270/MSN9_170 [Arabidopsis thaliana] dbj\|BAB10908.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAM26721.1\| AT5g40270/MSN9_170 [Arabi	-	-	64%
FL-Next	tr=Metal-dependent phosphohydrolase HD domain-containing protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).	-	-	65%
Blast2go	metal-dependent phosphohydrolase hd domain-containing protein	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring one-carbon groups, Methyltransferases.	EC:2.1.1.-	-	0.0	78%

Source	KEGGs	Term	Identity
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130	78%
Blast2go	Tetracycline biosynthesis	00253	78%
Blast2go	Histidine metabolism	00340	78%
Blast2go	Tyrosine metabolism	00350	78%
Blast2go	Phenylalanine metabolism	00360	78%
Blast2go	Tryptophan metabolism	00380	78%
Blast2go	Benzoxazinoid biosynthesis	00402	78%
Blast2go	Selenocompound metabolism	00450	78%
Blast2go	Biosynthesis of 12-, 14- and 16-membered macrolides	00522	78%
Blast2go	Polycyclic aromatic hydrocarbon degradation	00624	78%
Blast2go	Methane metabolism	00680	78%
Blast2go	Porphyrin and chlorophyll metabolism	00860	78%
Blast2go	Carotenoid biosynthesis	00906	78%
Blast2go	Phenylpropanoid biosynthesis	00940	78%
Blast2go	Flavonoid biosynthesis	00941	78%
Blast2go	Anthocyanin biosynthesis	00942	78%
Blast2go	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	78%
Blast2go	Isoquinoline alkaloid biosynthesis	00950	78%
Blast2go	Insect hormone biosynthesis	00981	78%
Blast2go	Biosynthesis of type II polyketide products	01057	78%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	78%
Blast2go	Metabolic pathways	01100	78%
Blast2go	Biosynthesis of secondary metabolites	01110	78%

Source	GOs	Term	Type	Identity
Blast2go	RNA metabolic process	GO:0016070	Biological Process	78%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	78%
Blast2go	methyltransferase activity	GO:0008168	Molecular Function	78%

Source	InterPros	Term	Type	Identity
Sma3	Metal-dependent phosphohydrolase, HD domain	IPR003607	-	-
Sma3	Ribosomal RNA large subunit methyltransferase RlmN;	IPR004383	-	-
Sma3	Elongator protein 3/MiaB/NifB	IPR006638	-	-
Sma3	Metal-dependent phosphohydrolase, HD subdomain	IPR006674	-	-
Sma3	Radical SAM	IPR007197	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: D7MJA0

Fln msg: your sequence is shorter than subject: 325 - 473

Fln protein: IDYIVDEHQIDIDPTDIKRVKEMILSSSDNSYTKAHSEKNFLFDIVANGRNGIDVDKFDYIERDCRACGISTSFQFERLMESMKVIDDEICYRAKEYWDVHKLFVTRADLFRMVYTHPKVQALELMLADALVLANGYLDISSRIDDPAEYWKLDDFVLKAIETAPDEGLKEARTLILRMRRRDLYQYCNEYSVPYEQLERYKEVTPQDIVCAQKKSGINLKEEDVAVSNVKIDLTRGEENPVNRVHFFQDYDSTSKFSIDKDRISQLLPASCQDRIVRVYSKKPELVSAISEAFENFQLKTYGVKTQVHGTPARKKHRSLNRQT*

Protein Length: 326

Fln nts: TGATAGACTACATTGTCGATGAGCACCAAATTGATATAGATCCTACTGATATTAAGAGAGTCAAGGAAATGATTCTTTCCAGCTCTGATAACTCATATACCAAGGCTCACAGTGAGAAGAATTTTCTATTTGATATTGTAGCAAATGGACGAAATGGAATAGATGTTGACAAGTTTGACTACATTGAACGTGACTGTCGAGCATGTGGTATAAGTACAAGTTTTCAATTTGAAAGGTTGATGGAAAGCATGAAGGTTATTGATGATGAAATATGTTATAGGGCTAAGGAATATTGGGATGTCCACAAATTATTTGTTACTCGAGCAGATCTTTTCAGGATGGTCTACACTCATCCAAAAGTGCAGGCTTTGGAACTCATGTTGGCTGATGCCCTTGTACTTGCAAATGGCTATCTAGATATTTCTTCCCGTATTGATGATCCAGCTGAGTACTGGAAGTTGGATGATTTTGTGTTGAAAGCTATTGAAACAGCTCCAGATGAAGGTTTGAAAGAAGCTCGAACATTGATATTGCGCATGCGGCGAAGAGATTTATACCAGTACTGCAATGAGTATTCTGTTCCATATGAACAATTAGAACGTTACAAGGAAGTCACCCCTCAAGATATTGTTTGTGCACAGAAAAAATCTGGAATAAACCTGAAGGAAGAAGATGTTGCAGTCAGCAATGTTAAAATTGATCTTACTCGGGGAGAAGAAAACCCTGTAAACAGGGTACACTTCTTCCAGGACTATGATAGCACATCAAAATTTTCCATTGATAAAGATCGGATTAGTCAATTACTACCCGCATCGTGTCAAGACAGAATTGTGCGGGTGTACTCAAAGAAACCAGAACTGGTTAGTGCTATTTCTGAAGCCTTTGAGAACTTCCAGCTGAAGACATATGGTGTGAAAACTCAAGTACATGGGACACCTGCAAGAAAAAAACATAGAAGCTTGAATAGACAGACGTAG___ATTTGTTTCTCCTGAAATGATTAAGCTATGCCGGATCATTTTTTGTTTGTTCGATTTCTTCAGAGCCAAAAGCCTTCTATAGCCATAGTCAACTGAACAATGGTTGCAAGTTTCATTTTGAGAGCATGCTAGCTGTGTTCCTCTTCGCCTTCAATTAAGAAAACAAAGTGGCAGACAG

Fln Alignment:

Contig10725___IDYIVDEHQIDIDPTDIKRVKEMILSSSDNSYTKAHSEKNFLFDIVANGRNGIDVDKFDYIERDCRACGISTSFQFERLMESMKVIDDEICYRAKEYWDVHKLFVTRADLFRMVYTHPKVQALELMLADALVLANGYLDISSRIDDPAEYWKLDDFVLKAIETAPDEGLKEARTLILRMRRRDLYQYCNEYSVPYEQLERYKEVTPQDIVCAQKKSGINLKEEDVAVSNVKIDLTRGEENPVNRVHFFQDYDSTSKFSIDKDRISQLLPASCQDRIVRVYSKKPELVSAISEAFENFQLKTYGVKTQVHGTPARKKHR
D7MJA0_______________IDHIVDTHHIDIDAQMLKRVKDMILASTEFSQLKSNAEKRFLYDIVANGRNGIDVDKFDYLVRDSRACGLGCNFQFQRLTETMRVMDNEICYRAKEYRNVHKLFATRADLYRTVYTHPKVKAIELMIVDAMVKANDFLGISSFISDPSEYWKLDDTILKTIEIAPDPELAEAKELILRVRRRQLYQFCNEYAVPKDKIDHFKAVTAQDIICSQKHTSLTLKEDDIAVTNVKIDLARGRENPLECINFFEDYDSAEKFGIPEDRVSHLLPTTYQDMIVRVYAKKPELVEAVSEAFENFQMRTYGVKTQVHATPEKKKRR

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
763			80	20	0.995493
765			80	20	0.995493
790		80		20	0.995493
814	16	83			0.994512
815		83		16	0.994512
816	83		16		0.994512
1015	16	83			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain