SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene10702

Length: 1272 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene10702 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TRZ9_PHYPA	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	protein	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	signal transduction	GO:0007165	Biological Process	83%
Blast2go	protein dephosphorylation	GO:0006470	Biological Process	83%
Blast2go	protein phosphatase type 2A regulator activity	GO:0008601	Molecular Function	83%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	83%
Blast2go	protein phosphatase type 2A complex	GO:0000159	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	Protein phosphatase 2A, regulatory subunit PR55	IPR000009	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	Protein phosphatase 2A, regulatory subunit PR55, conserved site	IPR018067	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-
Sma3		IPR019578	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACE2

Fln msg:

Fln protein: MTLKLWDINMESSPIATFKVHEHLRPKLCDLYENDSIFDKFECSLSGDGLHVATGSYSNMFQVFGCSAGNDEGTILEASKSPNRRRILPTPSRPGRSLASLTRSRTRRGNESPSGEINGGASDFNSKLLHLAWHPAANVIACAASNSLYMYYA*

Protein Length: 155

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTTTGCTTATAGCAGCTCAAAGGGCACTATTCGACTTATTGACATGCGACATCACCTTCGTGTCATTGACATTCAAAACTATTTGAGGAACAGGAAGCGCCAGGTTCTAGATCATTTTTTACAGAGATAATTGCTTCAATTTCAGATATAAAGTTTGCAAAAGATGGACGACACATTTTGAGTCGCGATTAC_-_ATGACACTTAAGCTATGGGACATAAACATGGAATCAAGTCCAATTGCAACTTTCAAGGTTCATGAACATCTAAGGCCTAAGTTATGTGATTTATATGAAAATGATTCAATCTTTGACAAGTTTGAGTGCTCCCTTAGTGGAGATGGACTTCATGTTGCAACTGGGTCTTACAGTAATATGTTCCAAGTCTTTGGTTGCTCTGCTGGTAATGATGAAGGAACCATTTTGGAAGCTAGCAAAAGTCCAAATAGAAGACGGATTTTGCCAACACCTTCAAGGCCTGGGAGGTCTCTTGCAAGTCTTACACGTAGTCGCACTCGTCGAGGAAATGAAAGCCCAAGTGGGGAAATAAATGGAGGTGCTTCCGATTTCAATTCAAAGTTGCTTCACTTAGCATGGCATCCAGCTGCAAATGTCATTGCATGTGCAGCTTCAAATAGTTTATACATGTATTATGCCTAA___ATTAAAACATCTCCTGTAGAATGTAATCAAAGGGCGGGTGATACTTTTTGTTCACCATCAGTGGAGCAATCTCACGTTAGCCTATTGCCAGAGAAGCAGCATGTATGATTATGCTCCTGAACTTGATGTGCGGGTTGTTACAGCTCGTAGCATGTTCATGTACTTTGTTCCAGGCTATAGAAGCTACAAAGGATCTCCTTTTATTAAAGGTTGCGGTGAAGTGCAGTCTTTTCAAGCAAAAGGTATGATCATATATTATAAAGTGTTTCACCAGCAAGAAATGGGAAAAGCTCTCTCTGGTGTATTATCACACAAGACACGCAAGTGTCATGTAGTCTGTGGCACTAACCCTAGTGCATAGGTTCTTAGTGGTAGCCCTGCTTGGCAATTAAGGGTTTTCTGGTCAGTTTGCATGTAATTCTCAAATTTCATAAATCGGTCTAGCTGATTTATCTGGTAAATCTGAAGCAGATTTCAAGCAACATCAATGCCAACATGTAATAATCATTCCATTTTAGTGAGTCTCCTTCTATAATTTAGAATAATGTCTAATTCTTCTGTTTATCCAGATCTTAATAGCCAATACCTGTGCT

Fln Alignment:

Contig10702___MTLKLWDINMESSPIATFKVHEHLRPKLCDLYENDSIFDKFECSLSGDGLHVATGSYSNMFQVFGCSAGNDEGTILEASKSPNRRRILPTPSRPGXXXXXXXXXXXXRGNESPSGEINGGASDFNSKLLHLAWHPAANVIACAASNSLYMYYA
D5ACE2_______________MTLKLWDINMESSPIATFKVHEHLRPKLCDLYENDSIFDKFECSLSGDGLHVATGSYSNMFQVFGCFAGNDEGTILEASKSPN-RRILPTPSRPGRSLASLTRSRTRRGNESPSGEINGGASDFNSKLLHLAWHPAANVIACAASNSLYMYYA

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
565	10	90			0.90298
566	10			90	0.90298
567			10	90	0.90298
569		10	90		0.90298
571		10		90	0.90298
572			10	90	0.90298
575	90		10		0.90298
605	87		12		0.992554
611			12	87	0.992554
612		12	87		0.992554
613		12		87	0.992554
615	12			87	0.992554
616	87		12		0.992554
617	87		12		0.992554
618	87			12	0.992554
620	12			87	0.992554
621	87	12			0.992554
622			12	87	0.992554
623	12			87	0.992554
624		12		87	0.992554
755	50			50	1.0
756	50	50			1.0
759	50	50			1.0
761	50			50	1.0
762	50			50	1.0
764		25	50		0.995533
765	25			50	0.995533
768	50	50			1.0
1172	66			33	0.997452
1175	33			66	0.997452
1176			33	66	0.997452
1180	66	33			0.997452
1181	33			66	0.997452
1183		33		66	0.997452
1184		66	33		0.997452
1185	66			33	0.997452
1186	66		33		0.997452
1187			33	66	0.997452
1188		33	66		0.997452
1189	66			33	0.997452
1193		66		33	0.997452
1194	33	33	33		0.997753
1196	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain