SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene10693

Length: 1285 nt

Origin of reads: Biogeco1 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene10693

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NBS/LRR (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8J3_PINTA	-	-	2.0e-36	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Blast2go	nbs lrr	-	-	3.30706e-43	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	apoptotic process	GO:0006915	Biological Process	3.30706e-43	70%
Blast2go	defense response	GO:0006952	Biological Process	3.30706e-43	70%
Blast2go	ATP binding	GO:0005524	Molecular Function	3.30706e-43	70%

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMX8

Fln msg: Overlapping hits, possible frame ERROR between 493 and 490, your sequence is shorter than subject: 316 - 653

Fln protein: HGNNNLSYWSAQLVQLRKRLPEDIKKRLQISYEALNEDEKQIFLDIACFFIGENREMAISIWNVSKWGGWLALQNLQNKCLVEVDSNNLIHMHDHLRDLAINEASVKKPFRFWHFDDLVKQSTGIITVRGIRMVPSEYHNDDDDDDDSIQMKKLHLVDTEGSxxxRILKSAKSPNLIWLRWNKCPYSSLPRDLIPMNKLKFLRVSGDKLETLWQPESQLPLCLEELDVNGCVKLKNIWGLEHLTKLQRLDVSWCFQLEELSAKGCTQLKRIRGLERAKQLQRLDVSGCAQLDKLSMGRCFQLEELLAKAPDNFRG*

Protein Length: 317

Fln nts: CCATGGAAACAATAACCTGTCTTATTGGTCTGCGCAATTGGTTCAACTTCGAAAGAGACTTCCTGAAGACATTAAAAAAAGGCTTCAAATTAGTTATGAAGCCTTGAATGAAGATGAAAAGCAAATATTCTTAGATATTGCTTGTTTTTTCATTGGAGAAAATAGGGAAATGGCCATTAGCATATGGAACGTCTCAAAATGGGGAGGCTGGTTAGCATTACAAAATCTACAAAACAAGTGTCTGGTCGAAGTAGACTCCAACAATCTGATACATATGCATGATCACCTACGGGATCTTGCAATAAATGAAGCCAGTGTTAAGAAACCATTTAGGTTTTGGCATTTTGATGACTTGGTGAAGCAATCAACTGGAATAATAACCGTGCGGGGAATTAGAATGGTTCCTAGCGAATACCATAATGATGATGATGATGATGATGATTCTATTCAAATGAAGAAGTTACACCTTGTTGATACTGAAGGTTCCxxxxxxxxxCGCATTCTGAAGAGCGCCAAGTCGCCAAATCTCATATGGCTCCGCTGGAACAAGTGTCCATACTCGTCTCTCCCTCGTGATCTGATTCCAATGAATAAGCTAAAGTTTCTTCGGGTGTCCGGGGATAAATTAGAAACATTGTGGCAACCAGAATCACAGCTCCCTTTATGTTTGGAGGAGTTGGACGTAAATGGATGTGTAAAGTTGAAGAACATATGGGGGTTGGAACACCTGACAAAACTTCAGCGGTTAGATGTTAGTTGGTGCTTTCAGTTAGAGGAATTGTCGGCAAAGGGATGTACGCAGCTGAAGAGGATACGGGGTTTGGAGCGCGCCAAACAACTTCAGAGGTTAGATGTTAGTGGGTGCGCTCAGTTAGATAAACTAAGTATGGGAAGGTGCTTTCAGTTAGAGGAATTGTTGGCAAAAGCGCCAGACAACTTCAGAGGTTAGATGTTAGTGGGTGCGCTCAGTTACATGAACTGAAGTATGGAGTGGTTGCTGTGAGTTAGAGGAGGTGGAATGTGTTGAACATTGTACGTGGTTGGAGGAGCTTGATGTCCGTTGGTGCTCCAAATTACAATGTCCAGCTTGGGAGTGGGTGGCATGGACGTTTTAAAACAAAAACAAAAGAGACTGTCATAAGACTATTTCATAATTGGGGACGTTCACAGTTGGTATAGTACATGGTCATTTTTTATTTACAACATGATTTAAAGACACATAATTTATAAGTCAAATCTGAAAAATGTATGGGGTAGCAGTCTGTTTAATCATCGTTGTTATGTTC

Fln Alignment:

Contig10693___NNNLSYWSAQLVQLRKRLPEDIKKRLQISYEALNEDEKQIFLDIACFFIGENREMAISIWNVSKWGGWLALQNLQNKCLVEVDSNNLIHMHDHLRDLAINEASVKKPFRFWH----FDDLVKQSTGIITVRGIRMVPSEYHNXXXXXXXSI----------QMKKLHLVDTEGSLxGRILKSAKSPNLIWLRWNKCPYSSLPRDLIPMNKLKFLRVSGDKLETLW------QPESQLPLCLEELDVNGC
B8LMX8_______________SKDISQWEDELESLQQILPSDIHETLIISYRSLNKEEKEIFLDIACFFINQNRDAAISTWNGSGWRAKRGFLNLQDKSLVEVDGENCIHMHDHLRDLGRQVAASSSPLRLWRTENVIEDLLHQSSD-ITVRGIRMVHDEYSGYDEDDLFGVIDTENAVLERILRRLQILHIEGSLxERILMKVKLPNLLWFHWEKCPHSSLPA-WVPIKNLRVLQVSHRRLNTMSFGEGEPQASLQLPESLEELRVYDC

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
688	66		33		0.997452
699	66			33	0.997452
700	66	33			0.997452
712	66		33		0.997452
720	33		66		0.997452
725	66	33			0.997452
726	66	33			0.997452
735	66		33		0.997452
759			33	66	0.997452
762			66	33	0.997452
766		33		66	0.997452
767		33	33	33	0.997753
769		66	33		0.997452
770	66		33		0.997452
772		33		66	0.997452
818	33		66		0.997452
819	33		66		0.997452
827	33		66		1.0
829		66	33		0.997452
830	33		66		0.997452
834		66		33	0.997452
835	66		33		0.997452
839	66		33		0.997452
844	33	66			0.997452
880	33		66		1.0
884			33	66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
420	442	ATG ATG ATG ATG ATG ATG ATG AT	23

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain