SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene10658

Length: 2117 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene10658
CGTCGTGACCTTGGCTGTCACTCATTTTAATACTTAACCGGCACACACAGAAGCCAACCAACCCAGAAACTGGCAGGGGTTCTGCTGCTACTTTGCAATGGCGATGACAAAAGTTGGGCGGGGATTCCAGTCCCGGATCGATAAACTGAACACTTTTGTGGGCAAGAGCGCGGTGGGTCGATACTTCAAGCTGGACGCCCGGAATTCGTGCTTCACAAGAGAGATCCGGGCGGGAACGGCAACGTTTCTGACAATGGCTTACATTCTAGCCGTCAACGCCAGCATTCTCACTGACTCGGGCGGCCCCTGCACGGTGGCTGACTGCACATCCACCTGCAGCGACTCGTCCGTTGCCGCGAGCTTGTGCCATGGGCGCAGCGCTAACGGGACGGTGTTGAGCTTGGTGAGCCCCGGGGTCGAGTGCAAGTTTCCGCCGGTGAACCCTGGTTACACGGCGTGCCTGGACAGAACGAAGAAGGACCTGATTGTGGCCACGGTGGCGTCGTCGCTCATCGGGTGTTTTATCATGGGGGTGTTTGCGAATTTGCCCTTGGCACTGGCGCCCGGCATGGGGACAAACGCGTATTTTGCTTATACAGTTGTGGGTTACCATGGCTCCGGGTCAATCTCGTATAAAAGCGCCCTGGCGGCTGTTTTTATCGAGGGGATTTTGTTTCTGCTCATTGCGGCTCTCGGTTTCAGGACGAAGCTCGCCAAGATGGTGCCGAAGCCGGTTCGAATCTCCTCGTCCGCAGGGATCGGTCTGTTTCTCGCCTTCATCGGGCTGCAATCCAGCGAGGGCATCGGGCTCGTCCAGTACAGCTCGTCGACTCTGGTAACGCTGGGCGCTTGCCCAAAAAAATTCATGGTCGGGCTAGCGCCCGTGCAGACGTTTCTCAACGGGACAACGGAGCTTCTCGCTGGAGGCACCGTCTCAGGCGACATTTTTTGCCTCAAGGGGCGAATGGAGAGCCCTACTTTCTGGCTCGGAATCGTCGGCTTCGTTATCATCGCTTACTGCCTGGTGCACGACGTGAAGGGCGCTATGATCTACGGAATCGTGTTCGTGACCGCCGTCTCATGGTTCCGCAACACTGAGGTCACTTACTTCGACGACACCGTTACAGGGAACGAGTCCTATGATTATTTCAAAAAAGTCGTAGATGTGCACAAGATTACCGGCACGGCCGGGGCCCTGAGCTTCAAGAATTTCCACAGCGGGCAGCTCTGGGTTGCTCTCATCACGTTTCTCTATGTAGATCTGCTGGACACCACCGGGACGCTTTACTCCATGGCCAAATTCGCAGGTTTCGTGGATGAAAAGGGGGATTTCGAAGGTCAATACTTTGCCTTCATGAGCGACGCCTTTGCCATCGTTATCGGTTCTCTGCTCGGCACTTCGCCGGTTACCACGTTCATCGAGTCGTCCACGGGGATCCGCGAAGGAGGCCGCACGGGACTCACTGCTCTAACGGTCTCCTGCTATTTCTTTCTTGCCTTCTTCTTCACGCCGCTTTTGGCCTCCATCCCGCCGTGGGCCGTCGGCCCGCCGCTCATTCTAGTCGGCGTGCTGATGATGAAGTCTGTGTTGGAAATCGACTGGGAGAACATGCGGGAAGCCATTCCAGCCTTCGTGACTCTCATTGTCATGCCCACCACCTACTCGATCGCCTATGGTTTGATCGGCGGAATCGGGACCTTCATCGTTCTACATCTCTGGGATTGGGTCAAGGACGCCTTCGGAAGCGTCGCCGGTAAGCGGAGGATCCAGTCCCCCACAGCCGCAGCCGCAGCCACCGGCCCCACGCAGAGAGACATTGAGATGAACGGATCTAGCATCTGACTTCGGCGGGCGGGGATCGAAGCCGTGACCTACAAAAAAAAACCACTCACAGGTTGTTATTCTATTGTTGTTTATTGTTAACAGGTAGCTTAGAAATCAGAGTAGGGCTTCGCAGCAGGCTGACTCCACCATGGCGTGTATATTATTTATTTTCAATGAAATTTACCCGATTCTTGACTTGCATACTGTACAATGAACTGCATCTCGTCATGCCATGAAAAATTCAAACTTCTCTTTTTTCAATTAAAAAAAATTGCATGATTCGCTGAAAAAA

Ace file of the UniGene sp_v2.0_unigene10658 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Adenine/guanine permease AZG1 n=2 Tax=Arabidopsis RepID=AZG1_ARATH	-	-	74%
FL-Next	sp=Adenine/guanine permease AZG1; Arabidopsis thaliana (Mouse-ear cress).	-	-	76%
Blast2go	adenine guanine permease azg1-like	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	guanine transport	GO:0015854	Biological Process	83%
Blast2go	adenine transport	GO:0015853	Biological Process	83%
Blast2go	purine base transmembrane transporter activity	GO:0005345	Molecular Function	83%
Blast2go	membrane	GO:0016020	Cellular Component	83%
Blast2go	plastid	GO:0009536	Cellular Component	83%

Source	InterPros	Term	Type	e value	Identity
Sma3	Xanthine/uracil/vitamin C permease	IPR006043	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9SRK7

Fln msg:

Fln protein: MAMTKVGRGFQSRIDKLNTFVGKSAVGRYFKLDARNSCFTREIRAGTATFLTMAYILAVNASILTDSGGPCTVADCTSTCSDSSVAASLCHGRSANGTVLSLVSPGVECKFPPVNPGYTACLDRTKKDLIVATVASSLIGCFIMGVFANLPLALAPGMGTNAYFAYTVVGYHGSGSISYKSALAAVFIEGILFLLIAALGFRTKLAKMVPKPVRISSSAGIGLFLAFIGLQSSEGIGLVQYSSSTLVTLGACPKKFMVGLAPVQTFLNGTTELLAGGTVSGDIFCLKGRMESPTFWLGIVGFVIIAYCLVHDVKGAMIYGIVFVTAVSWFRNTEVTYFDDTVTGNESYDYFKKVVDVHKITGTAGALSFKNFHSGQLWVALITFLYVDLLDTTGTLYSMAKFAGFVDEKGDFEGQYFAFMSDAFAIVIGSLLGTSPVTTFIESSTGIREGGRTGLTALTVSCYFFLAFFFTPLLASIPPWAVGPPLILVGVLMMKSVLEIDWENMREAIPAFVTLIVMPTTYSIAYGLIGGIGTFIVLHLWDWVKDAFGSVAGKRRIQSPTAAAAATGPTQRDIEMNGSSI*

Protein Length: 583

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTAATACTTAACCGGCACACACAGAAGCCAACCAACCCAGAAACTGGCAGGGGTTCTGCTGCTACTTTGCA_-_ATGGCGATGACAAAAGTTGGGCGGGGATTCCAGTCCCGGATCGATAAACTGAACACTTTTGTGGGCAAGAGCGCGGTGGGTCGATACTTCAAGCTGGACGCCCGGAATTCGTGCTTCACAAGAGAGATCCGGGCGGGAACGGCAACGTTTCTGACAATGGCTTACATTCTAGCCGTCAACGCCAGCATTCTCACTGACTCGGGCGGCCCCTGCACGGTGGCTGACTGCACATCCACCTGCAGCGACTCGTCCGTTGCCGCGAGCTTGTGCCATGGGCGCAGCGCTAACGGGACGGTGTTGAGCTTGGTGAGCCCCGGGGTCGAGTGCAAGTTTCCGCCGGTGAACCCTGGTTACACGGCGTGCCTGGACAGAACGAAGAAGGACCTGATTGTGGCCACGGTGGCGTCGTCGCTCATCGGGTGTTTTATCATGGGGGTGTTTGCGAATTTGCCCTTGGCACTGGCGCCCGGCATGGGGACAAACGCGTATTTTGCTTATACAGTTGTGGGTTACCATGGCTCCGGGTCAATCTCGTATAAAAGCGCCCTGGCGGCTGTTTTTATCGAGGGGATTTTGTTTCTGCTCATTGCGGCTCTCGGTTTCAGGACGAAGCTCGCCAAGATGGTGCCGAAGCCGGTTCGAATCTCCTCGTCCGCAGGGATCGGTCTGTTTCTCGCCTTCATCGGGCTGCAATCCAGCGAGGGCATCGGGCTCGTCCAGTACAGCTCGTCGACTCTGGTAACGCTGGGCGCTTGCCCAAAAAAATTCATGGTCGGGCTAGCGCCCGTGCAGACGTTTCTCAACGGGACAACGGAGCTTCTCGCTGGAGGCACCGTCTCAGGCGACATTTTTTGCCTCAAGGGGCGAATGGAGAGCCCTACTTTCTGGCTCGGAATCGTCGGCTTCGTTATCATCGCTTACTGCCTGGTGCACGACGTGAAGGGCGCTATGATCTACGGAATCGTGTTCGTGACCGCCGTCTCATGGTTCCGCAACACTGAGGTCACTTACTTCGACGACACCGTTACAGGGAACGAGTCCTATGATTATTTCAAAAAAGTCGTAGATGTGCACAAGATTACCGGCACGGCCGGGGCCCTGAGCTTCAAGAATTTCCACAGCGGGCAGCTCTGGGTTGCTCTCATCACGTTTCTCTATGTAGATCTGCTGGACACCACCGGGACGCTTTACTCCATGGCCAAATTCGCAGGTTTCGTGGATGAAAAGGGGGATTTCGAAGGTCAATACTTTGCCTTCATGAGCGACGCCTTTGCCATCGTTATCGGTTCTCTGCTCGGCACTTCGCCGGTTACCACGTTCATCGAGTCGTCCACGGGGATCCGCGAAGGAGGCCGCACGGGACTCACTGCTCTAACGGTCTCCTGCTATTTCTTTCTTGCCTTCTTCTTCACGCCGCTTTTGGCCTCCATCCCGCCGTGGGCCGTCGGCCCGCCGCTCATTCTAGTCGGCGTGCTGATGATGAAGTCTGTGTTGGAAATCGACTGGGAGAACATGCGGGAAGCCATTCCAGCCTTCGTGACTCTCATTGTCATGCCCACCACCTACTCGATCGCCTATGGTTTGATCGGCGGAATCGGGACCTTCATCGTTCTACATCTCTGGGATTGGGTCAAGGACGCCTTCGGAAGCGTCGCCGGTAAGCGGAGGATCCAGTCCCCCACAGCCGCAGCCGCAGCCACCGGCCCCACGCAGAGAGACATTGAGATGAACGGATCTAGCATCTGA___CTTCGGCGGGCGGGGATCGAAGCCGTGACCTACAAAAAAAAACCACTCACAGGTTGTTATTCTATTGTTGTTTATTGTTAACAGGTAGCTTAGAAATCAGAGTAGGGCTTCGCAGCAGGCTGACTCCACCATGGCGTGTATATTATTTATTTTCAATGAAATTTACCCGATTCTTGACTTGCATACTGTACAATGAACTGCATCTCGTCATGCCATGAAAAATTCAAACTTCTCTTTTTTCAATTAAAAAAAATTGCATGATTCGCTGAAAAAA

Fln Alignment:

Contig10658___IDKLNTFVGKSAVGRYFKLDARNSCFTREIRAGTATFLTMAYILAVNASILTDSGGPCTVADCTSTCSDSSVAASLCHGRSANGTVLSLVSPGVECKFPPVNPGYTACLDRTKKDLIVATVASSLIGCFIMGVFANLPLALAPGMGTNAYFAYTVVGYHGSGSISYKSALAAVFIEGILFLLIAALGFRTKLAKMVPKPVRISSSAGIGLFLAFIGLQSSEGIGLVQYSSSTLVTLGACPKKFMVGLAPVQTFLNGTTELLAGGTVSGDIFCLKGRMESPTFWLGIVGFVIIAYCLVHDVKGAMIYGIVFVTAVSWFRNTEVTYFDDTVTGNESYDYFKKVVDVHKITGTAGALSFKNFHSGQLWVALITFLYVDLLDTTGTLYSMAKFAGFVDEKGDFEGQYFAFMSDAFAIVIGSLLGTSPVTTFIESSTGIREGGRTGLTALTVSCYXXXXXXXXXXXASIPPWAVGPPLILVGVLMMKSVLEIDWENMREAIPAFVTLIVMPTTYSIAYGLIGGIGTFIVLHLWDW
Q9SRK7_______________LNRLNTYVGSSRVGKRFKLAERNSTFTTELRAGTATFLTMAYILAVNASILSDSGGTCSVSDCIPLCSNPAIEPSQCTGPG-----LRLIQPDVSCKFNPVNPGYAACVEEIRKDLIVATVAASLIGCVIMGLMANLPLALAPGMGTNAYFAYTVVGFHGSGSISYRTALAAVFIEGLIFLFISAIGFRAKLAKLVPKPVRISSSAGIGLFLAFIGLQNNQGIGLVGYSPSTLVTLAACPASSRISLAPVITSANGTVSLLAGGSVSGDIMCIHGRMESPTFWLGIVGFVIIAYCLVKNVKGAMIYGIVFVTAVSWFRNTEVTAFPNTSAGDAAHDYFKKIVDVHVIKHTAGALSFSGINKGHFWEALVTFLYVDILDTTGTLYSMARFAGFVDEKGDFAGQYFAFMSDASAIVIGSLLGTSPVTVFIESSTGIREGGRTGLTAITVAVYFLLAMFFTPLLASIPAWAVGPPLILVGVMMMKSVTEIDWEDMREAIPAFVTMILMPLTYSVAYGLIGGIGSYVVLHLWDW

SNPs (tot: 57)

Position	A %	C %	G %	T %	Probability
316	25		75		0.996473
338		25		75	0.996473
854	66	33			0.997452
856			33	66	0.997452
863	33		66		0.997452
884	33		66		0.997452
895		66	33		0.997452
910		66		33	0.997452
932		33		66	0.997452
974	60	40			1.0
995	60			40	1.0
996	60		40		1.0
997		40		60	1.0
1021	6	40	53		1.0
1027		6	53	40	1.0
1042		42		57	1.0
1087		35		64	1.0
1142	30		69		1.0
1157		27		72	1.0
1173	75			12	0.975346
1184		25	75		1.0
1186		75		25	1.0
1192	25	75			1.0
1194	25			75	1.0
1198	87		12		0.992554
1199	25		75		1.0
1200		75	25		1.0
1202	71			28	1.0
1203		28	71		1.0
1205	71	28			1.0
1208			28	71	1.0
1233			66	33	1.0
1601		66		33	0.997452
1751	80	20			0.995493
1784	20		80		0.995493
1792	80		20		0.995493
1820	25		75		0.996473
1897			33	66	0.997452
1915	16		83		0.994512
1917	83		16		0.994512
1918			16	83	0.994512
1921	16	83			0.994512
1922		16	83		0.994512
1924	16		83		0.994512
1989		33	66		0.997452
2011			33	66	0.997452
2012	33			66	0.997452
2016		66	33		0.997452
2018		33		66	0.997452
2019	33	66			0.997452
2024	33			66	0.997452
2025			33	66	0.997452
2027		66		33	0.997452
2028	66	33			0.997452
2030	66	33			0.997452
2032	33			66	0.997452
2033	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain