SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene10643

Length: 1528 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene10643

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Sugar transporter, putative n=1 Tax=Ricinus communis RepID=B9S3N8_RICCO	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	32%
Blast2go	monosaccharide-sensing protein	-	-	66%

Source	GOs	Term	Type	Identity
Blast2go	transport	GO:0006810	Biological Process	66%
Blast2go	carbohydrate transmembrane transporter activity	GO:0015144	Molecular Function	66%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	66%

Source	InterPros	Term	Type	Identity
Sma3	Sugar/inositol transporter	IPR003663	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLK8

Fln msg: your sequence is shorter than subject: 306 - 502

Fln protein: PESGPHAPSAISSMRSISNLEEGEAVQVAALVGEPALCLTERNADPSVSAAEGTICGPAILHPSQMAEKGISWSDFADIRVRRALIVGMSLQLLQQLCGIGAVLNFTPQILEQSGVDTLLVQAGIKAESASLLASAVTCLPMLPFIMLAMFLMDRAGRRQILLSTTPVLFITLLTIALVNKLLQPGIVQGGISVVGLMVFFCAFNMGFGAVPNIFCSEIFPTRVRGMCLALCVIITFASNMLIIFLFPTMNKALGTPGVFGFFCIMSAFSWIFVFLKVPETKGFPLEVITEFFAVSTSPAVKEGA*

Protein Length: 307

Fln nts: CCCTGAATCTGGTCCTCATGCACCCTCAGCTATTAGCTCTATGAGATCAATATCCAATCTAGAAGAAGGAGAAGCTGTTCAGGTTGCTGCTTTGGTGGGTGAGCCAGCCTTGTGCTTGACAGAAAGAAATGCGGATCCCTCTGTGTCTGCAGCAGAAGGAACCATCTGTGGACCTGCAATTCTGCACCCGTCACAAATGGCTGAAAAGGGTATATCATGGTCTGATTTTGCTGACATCAGAGTAAGAAGAGCTCTTATAGTGGGGATGTCTCTTCAACTACTCCAGCAGCTTTGTGGCATCGGTGCAGTCCTTAATTTCACACCTCAAATACTTGAACAGTCTGGAGTTGACACCCTGTTAGTTCAAGCAGGCATTAAGGCAGAGTCTGCTTCTCTTTTGGCAAGTGCAGTTACATGTCTGCCAATGTTGCCCTTTATAATGCTTGCAATGTTTCTGATGGACCGTGCTGGAAGAAGGCAAATCCTCCTATCCACCACTCCGGTACTATTCATTACATTGCTTACAATTGCCTTGGTAAATAAATTGCTTCAACCAGGGATTGTCCAAGGAGGTATATCAGTTGTAGGCCTGATGGTATTCTTTTGTGCCTTCAACATGGGATTTGGTGCAGTGCCAAACATTTTCTGTTCGGAAATCTTTCCAACAAGAGTTAGAGGAATGTGCTTGGCTTTGTGTGTTATAATCACATTTGCTTCAAATATGCTTATCATATTCCTTTTTCCTACCATGAACAAGGCCTTGGGAACACCAGGTGTTTTTGGATTTTTCTGTATTATGAGTGCGTTTTCTTGGATATTTGTCTTCCTCAAGGTTCCAGAGACCAAAGGATTTCCTTTGGAAGTTATCACAGAGTTCTTTGCTGTATCCACATCTCCAGCTGTAAAGGAAGGTGCATAG___ATCAACCAGAAACTCGGCACTAAATGATGGACCTAGATTTGCTGATTGTAAAATATTATGGTCACGGTTTTGCGTAATTCAGAGCAAAAGCAGAAAGTTGAGCGAGAATAATGTTCAGCGCTACTCTATTTCCTTTTTTCCAGATTGCAGCCTCAGCTTCTCTGCAATGACTGGTTCAGAAGCAGCTTTTGGTATTTACCTTATTCAATGTATTTTATCTTAGGAGGTTTTAGGTTGAGGGCAATTGACTTTAGTTTTCTTGTGAAGGCAAAGGGCAAGGGCAGACCAGTATACGATCGGTCACTAGTAGCATACATTACCTTCGAAGACTTTGAAGCTTTTATTGACAATTGCCATATGGCATTTGGATTTGAATTGTCCAGTTCTGTAAACGTGATCGAAGCACTGTAGGCATGATTAGATTGAGAAAAAAATTGCTTGAATCTGCAACTTGGGTTGCTATAATGTATTCAATTGGCCAAAGAATTAAGAGAAGGCAGTAGGCAGTTTGTTTGATTCTGGATACCTTCTCTACAACAGACAAACGTGTCTATTACAGGTTTCCTGCAGACTTGCCCATAAATAAGAGAAATATATTAACAAACCCCT

Fln Alignment:

Contig10643___RNADPSVSAAEGTICGPAILHPSQMAEKGISWSDFADIRVRRALIVGMSLQLLQQLCGIGAVLNFTPQILEQSGVDTLLVQAGIKAESASLLASAVTCLPMLPFIMLAMFLMDRAGRRQILL----STTPVLFITLLTIALVNKLLQPGIVQGGISVV---GLMVFFCAFNMGFGAVPNIFCSEIFPTRVRGMCLALCVIITFASNMLIIFLFPTMNKAL--GTPGVFGFFCIMSAFSWIFVFLKVPETKGFPLEVI
B8LLK8_______________RGPDADVSVEESEI---KIAVETNYRQRGVKASDLLQQRYALPLTIGIGLLLLQQLSGINGIMFYSTYIFKSAGVSSSKV--------ATLGLGAIQVV----MTAFAAWLMDKAGRRLLLLISSGGTAICLFLVGLAFFLKNHV-SGGSHETGYSVLALTGVLVYIIAFSLGMGAVPWIIMSEILPVNVKGVGGSIATLTNWLTSFVVTM---TINLLLEWSSSGTFWIYALVAAFTFVFVALWVPETKGRTLEEI

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
158	75		25		0.996473
400			33	66	0.997452
790		14		85	0.993533
791			14	85	0.993533
799		14		85	0.993533
800		14		85	0.993533
801	85			14	0.993533
804	85		14		0.993533
805		14	85		0.993533
808		85		14	0.993533
809		14	85		0.993533
810	14			85	0.993533
811		14		85	0.993533
815	14			85	0.993533
841		85	14		0.993533
842	85			14	0.993533
844	85			14	0.993533
849	85			14	0.993533
850	85			14	0.993533
854	85	14			0.993533
856			14	85	0.993533
859	14	85			0.993533
860		14		85	0.993533
862		14		85	0.993533
863	14		85		0.993533
1096		10	89		0.999919
1098		10		89	0.999919

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain