SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene10637

Length: 1596 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene10637

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	HECT; Ubiquitin [Medicago truncatula]	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	e3 ubiquitin-protein ligase upl5	-	-	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	73%

Source	GOs	Term	Type	Identity
Blast2go	leaf senescence	GO:0010150	Biological Process	73%
Blast2go	response to jasmonic acid stimulus	GO:0009753	Biological Process	73%
Blast2go	drug transmembrane transport	GO:0006855	Biological Process	73%
Blast2go	protein ubiquitination	GO:0016567	Biological Process	73%
Blast2go	response to hydrogen peroxide	GO:0042542	Biological Process	73%
Blast2go	drug transmembrane transporter activity	GO:0015238	Molecular Function	73%
Blast2go	protein binding	GO:0005515	Molecular Function	73%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	73%
Blast2go	antiporter activity	GO:0015297	Molecular Function	73%
Blast2go	cytoplasm	GO:0005737	Cellular Component	73%
Blast2go	membrane	GO:0016020	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	HECT	IPR000569	-	-
Sma3	Ubiquitin	IPR000626	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3		IPR015706	-	-
Sma3	C-type lectin, conserved site	IPR018378	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AD16

Fln msg: your sequence is longer than subject: 261 - 118

Fln protein: MHRVQIDMVLARTFFKQLAGLSISWEDTQDADPYLYSSCKKILEMDSDILDSDLLGLTFVTEVEELGSRKVMELCPGGRDLVVNSKNRHRYVKLLIQCHFVTPVAEQIKCFAQGFSDLLGNSTLQQFLRALEPEDLDLMLYGKGHDLCVQDWKDHTEYHEYTEADDQIIWFWQVVNGMTVEQRRRLIFFSTSLTHLPPEGFSGLPSKFHIHKAHTNLSWFPIAHTCFYQLVLPPYTSFEMMHARLHAITEVHIAEGFGFA*

Protein Length: 262

Fln nts: GGGAGGAATTTCTGTGGAGTTTGCGACTGAGGAAGCAACTGGCCCAGGAGTTTTGCGGGAGTGGTTTTCATTAATATGCAGAGAAATTTTTAATCCTGCAAATGCTCTTTTCTTATGTTGCCCCAATGATCGGCGAAGATTTTTCCCCAACCCTGCATCTGGAGTGAATCCTGGTCATCTATCCTATTTCAAATTTTGTGGTCGTGTTATTGGTTTGGCATTG_-_ATGCATAGGGTGCAAATTGACATGGTCCTAGCTCGAACATTCTTCAAACAATTGGCTGGTCTCTCTATCTCCTGGGAGGATACGCAAGATGCAGATCCATACTTGTATTCAAGTTGCAAGAAAATCTTGGAAATGGATTCAGATATTCTGGACTCGGATCTACTAGGACTCACGTTTGTGACAGAAGTTGAAGAACTGGGTTCCCGAAAGGTCATGGAACTTTGTCCAGGGGGCAGGGACTTGGTTGTAAACAGTAAGAATCGACATCGATATGTTAAACTGCTGATTCAATGTCATTTTGTGACACCAGTTGCAGAGCAAATTAAATGCTTTGCCCAGGGGTTTTCTGATTTGCTTGGGAATTCAACACTCCAACAGTTTCTTCGAGCTTTAGAACCTGAAGATCTGGATCTAATGTTGTATGGGAAGGGTCATGATTTATGTGTACAGGATTGGAAAGACCATACGGAGTATCATGAATACACTGAAGCTGATGATCAAATTATTTGGTTCTGGCAGGTGGTCAATGGAATGACAGTGGAACAACGCAGAAGGCTAATCTTCTTTTCAACATCTCTAACCCACCTGCCACCAGAGGGATTTTCAGGACTTCCTTCAAAGTTTCATATTCACAAGGCCCATACCAACCTAAGCTGGTTTCCTATAGCACATACATGTTTTTACCAGCTTGTCCTTCCACCATATACTAGTTTTGAGATGATGCATGCTCGTCTTCATGCCATCACTGAAGTTCATATTGCAGAAGGCTTTGGTTTTGCATAG___AGGTATGCACCTACTGTATATAATGAAGTATCTATATGATTGCTGTTTTTACTTTTGTTGGTGAAAGTTTTGATCAATACCTTTTTTGTTTCTATAAGAATCTTGAAAGTCTCTGTAATGCAGACGGGGTCTGATCCATGTAAATACGCAGGTACTGGAAGTATTGGTTATATTCTATATAACTATTGTTCAGACCTCACACAAATGTATTTGGCAAGTCCACGTTGCTCTATAGAGTTATGTCTATATGACATTATTGTGGTGATTGTTATTTTTGCTTGAGCAAATTTTTTGGCAGCCGAAGGGACATGCCATGATTCAGATTCAATGGTTGTGTGTTCATACATTCATGTATGTTAAACTGTAGGATGAAACCTGTACATGCATGCATATAACATATATATGCATTGACATAGTTAAATAGTGTTTAAGGTTGTTTGTGTCTTGTGAGCGATTCATGCATTATAGGCCCTTTGGGCATTTTGGACTTGAATGGCATGAAATTTGCATATTGATAAGGCTCATGCCATGCAGGTGTATGTGGATTCTGTCTTTGATGTTCACAAGGTGAGCCTACAAGAGGGTAAAGT

Fln Alignment:

Contig10637___MELCPGGRDLVVNSKNRHRYVKLLIQCHFVTPVAEQIKCFAQGFSDLLGNSTLQQFLRALEPEDLDLMLYGKGHDLCVQDWKDHTEYHEYTEADDQIIWFWQ
D5AD16_______________MELCPGGRDLVVNSKNRHRYVKLLIQCHFVTPVAEQVKCFAQGFSDLLGNSTLQQFLRALEPEDLDLMLYGKGHDLCIQDWKDHTEYHEYTEADEQIIWFWQ

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
139	75		25		0.996473
247	80		20		0.995493
281	16	83			0.994512
285			16	83	0.994512
843	14	85			0.993533
911	88			11	0.923564
913		88	11		0.923564
914		11		88	0.923564
919	11	88			0.923564
920		11		88	0.923564
1255		14		85	0.993533
1286		50		50	1.0
1389	25		75		0.996473
1412	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain