SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene10632

Length: 1041 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene10632

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DSPc multi-domain protein	-	-	7.0e-08	26%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	37%
Blast2go	protein like sex4 1	-	-	0.0	73%

Source	GOs	Term	Type	Identity
Blast2go	starch catabolic process	GO:0005983	Biological Process	73%
Blast2go	protein dephosphorylation	GO:0006470	Biological Process	73%
Blast2go	protein tyrosine/serine/threonine phosphatase activity	GO:0008138	Molecular Function	73%
Blast2go	carbohydrate binding	GO:0030246	Molecular Function	73%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	73%
Blast2go	starch grain	GO:0043036	Cellular Component	73%

Source	InterPros	Term	Type	e value	Identity
Sma3	Dual specificity phosphatase, catalytic domain	IPR000340	-	0.0	-
Sma3	PDZ domain	IPR001478	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
576		71		28	1.0
657	85		14		0.993533
712		12	87		0.992554
748	87		12		0.992554
825		20	80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain