SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene10630

Length: 1091 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene10630

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Mitochondrial carrier protein CGI-69 n=4 Tax=Andropogoneae RepID=B6TPN5_MAIZE	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	30%
Blast2go	mitochondrial carrier protein cgi-69	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	82%
Blast2go	binding	GO:0005488	Molecular Function	82%
Blast2go	mitochondrial inner membrane	GO:0005743	Cellular Component	82%
Blast2go	integral to membrane	GO:0016021	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3		IPR001993	-	-
Sma3	Mitochondrial carrier protein	IPR002067	-	-
Sma3	Adenine nucleotide translocator 1	IPR002113	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Mitochondrial substrate/solute carrier	IPR018108	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P0D2

Fln msg: Unexpected stop codon in the beginning of your sequence,

Fln protein: SMFALELKNSSIILVL*LINICIHGVVKTRLQAQVGQKTPAVRSDRYNGAFDAFCKIIRQEGIFRLWRGTSAGLTLAVPTVGIYMPCYDIFRDWLEDFSYNNAPLFTPYAPLVAGSMARSLACIVCSPIELAKTRMQAQKEIFMDIKPPGMWKTLVGVRLSVKNTSGGRDLQGFQVLWTGAGAQLARDVPFSAICWSTLEPLRRYLLGMVKSDVNALSILGANFSAGLIAGGIAAAATCPLDVAKTRRQIEKDPMKAMKINTRKILMEIWRDGGIRGLFTGLGPRVSRAGPSVGIVVSFYEVLKYMLHQT*

Protein Length: 312

Fln nts: GCTCCATGTTTGCCCTTGAATTGAAAAATTCCTCGATAATTCTTGTACTTTAACTTATAAATATATGCATCCATGGCGTCGTCAAGACCAGATTGCAAGCTCAGGTTGGCCAGAAGACGCCAGCTGTTAGGTCGGACAGGTATAATGGCGCATTTGATGCATTCTGCAAAATAATTCGACAGGAGGGGATATTTCGGCTTTGGAGAGGGACAAGCGCTGGTCTAACGTTGGCGGTGCCAACTGTGGGAATATATATGCCTTGCTATGACATCTTTCGAGATTGGCTTGAAGACTTTTCATATAATAATGCACCACTGTTCACGCCATATGCTCCTTTAGTAGCAGGATCTATGGCACGTTCTTTGGCATGTATTGTTTGTTCTCCCATTGAACTAGCAAAGACGAGGATGCAGGCACAGAAGGAAATTTTCATGGATATCAAACCTCCAGGAATGTGGAAGACTTTAGTTGGTGTGCGATTGTCTGTGAAAAATACATCTGGTGGAAGAGATTTGCAAGGATTCCAGGTTCTGTGGACAGGAGCTGGAGCTCAGCTAGCTCGTGATGTTCCCTTCTCTGCAATTTGCTGGTCAACTCTGGAACCACTCAGGCGTTACTTACTTGGGATGGTTAAGTCTGATGTCAATGCATTAAGTATTTTGGGAGCAAACTTCTCAGCTGGCCTCATAGCTGGTGGTATTGCTGCTGCTGCCACTTGCCCTTTGGATGTTGCCAAAACACGACGACAAATAGAGAAGGATCCAATGAAAGCAATGAAAATAAATACCAGGAAAATACTGATGGAAATTTGGAGGGATGGTGGAATACGGGGGCTATTCACAGGTCTAGGACCACGTGTAAGCCGTGCTGGTCCTTCTGTTGGAATTGTGGTTTCATTCTATGAAGTTCTCAAATACATGCTACACCAGACATAG___CTGTCTCAACGAGTATGCAATGTGCATACAAACATGCAGAACTTAGTGTGCTAACTGAGATGGTCTGTAATGCTTGTGCTTAAGAATGAAAGTGCAAGGCATCTCAGATTGCATCTTCAGAATGTATGTGAGTTACCTTTTGGAGAATAGGTACAA

Fln Alignment:

Contig10630___VVKTRLQAQVGQKTPAVRSDRYNGAFDAFCKIIRQEGIFRLWRGTSAGLTLAVPTVGIYMPCYDIFRDWLEDFSYNNAPLFTPYAPLVAGSMARSLACIVCSPIELAKTRMQAQKEIF
A9P0D2_______________LVKVRLQSE-GKLPPGVPR-RYSGAMNAYSTIVRQEGVRALWTGLGPNIARNAIVNAAELASYDQVKQSLLKLPGFSDNVFT---HLLSGLGAGFFAVCVGSPVDVVKSRMMGNSDAY

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
377		14		85	0.993533
496	90		10		0.90298
497		90	10		0.90298
612	14		85		0.993533
727		14	85		0.993533
729	83	16			0.994512
736		87	12		0.992554
737	87		12		0.992554
738	87		12		0.992554
772	83		16		0.994512
845		20	80		0.995493
850	80		20		0.995493
851			80	20	0.995493
856	80			20	0.995493
857		80		20	0.995493
866	80	20			0.995493
867			80	20	0.995493
869	20	80			0.995493
870		20	80		0.995493
1053		66		33	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
701	712	TGC TGC TGC TGC	12

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain