SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene10609

Length: 820 nt

Origin of reads: Biogeco1 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene10609

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nbs-lrr resistance protein n=1 Tax=Populus trichocarpa RepID=B9IP02_POPTR	-	-	5.0e-16	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%
Blast2go	bed finger-nbs-lrr resistance protein	-	-	2.24208e-43	56%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydrolase activity	GO:0016787	Molecular Function	2.24208e-43	56%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	2.24208e-43	56%

Source	InterPros	Term	Type	Identity
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-

Full-Lengther Next Prediction

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
455	20		80		0.995493
477	75		25		0.996473
491	75	25			0.996473
500		75		25	0.996473
540	83	16			0.994512
544	83	16			0.994512
545	83		16		0.994512
546		83		16	0.994512
548	14		85		0.993533
550	85	14			0.993533
552	85			14	0.993533
556	71		14	14	0.984337
558	85			14	0.993533
559		85	14		0.993533
560	14			85	0.993533
562		85		14	0.993533
563	85	14			0.993533
592			14	85	0.993533
631	85	14			0.993533
647	28		71		1.0
664		85		14	0.993533
671	14			85	0.993533
712		83		16	0.994512
723		80		20	0.995493
725			80	20	0.995493
727		80		20	0.995493
772			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain