SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene10540

Length: 532 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene10540
ATGGGGAGCCGTTGGTAAATCCTTTCGAGCATTGCCAAGTACCCTGTTGTTAAAACCCGCACGTCGTGACCTTGGCTGTCACTCAGTTCCATTATAGATTCAGTAGTTTCTCTCAGAAGTAAAGCTGTTTCTGTGTGTTTGTACGAGAATGGGGAAATCAAAGTCGTGCAAGATTGAGGAAAAATGCATACCCCTTTCCCCTAACAATGCATATGAATCTCTGCGCATGGCCAGGATTGCTGAGAACCAGGCTCGCATGGCAGAGTTGGGAGTCCAAAAGCAAGCAGGAGACCTGAAAGCATTCTTCAAGGTTACCAAATCCCCGCGCAAATACAAAACCTACTCTGCTCAGAAATCGGTCCTGGAATGCACTCCCATTCGCCGGTCAGAGCGTCTGAAAAGCAGAACTCCTTCCACCCCAAATTCTGAATCCAAAAACCTTCAACCGCCTTCGTCAGATACCAAAATAAAACGCTTATTCGAGTCAGAGGATGAGACGAGTCCCAAGAGCACAAGAAATTTGGCACGTTAT

Ace file of the UniGene sp_v2.0_unigene10540 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	uncharacterized protein loc100775920	-	-	71%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc-finger domain of monoamine-oxidase A repressor R1	IPR018866	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRJ6

Fln msg: Distance to subject end: 177 aas, your sequence is shorter than subject: 128 - 305

Fln protein: MGKSKSCKIEEKCIPLSPNNAYESLRMARIAENQARMAELGVQKQAGDLKAFFKVTKSPRKYKTYSAQKSVLECTPIRRSERLKSRTPSTPNSESKNLQPPSSDTKIKRLFESEDETSPKSTRNLARY

Protein Length: 129

Fln nts: ATGGGGAGCCGTTGGTAAATCCTTTCGAGCATTGCCAAGTACCCTGTTGTTAAAACCCGCACGTCGTGACCTTGGCTGTCACTCAGTTCCATTATAGATTCAGTAGTTTCTCTCAGAAGTAAAGCTGTTTCTGTGTGTTTGTACGAGA_-_ATGGGGAAATCAAAGTCGTGCAAGATTGAGGAAAAATGCATACCCCTTTCCCCTAACAATGCATATGAATCTCTGCGCATGGCCAGGATTGCTGAGAACCAGGCTCGCATGGCAGAGTTGGGAGTCCAAAAGCAAGCAGGAGACCTGAAAGCATTCTTCAAGGTTACCAAATCCCCGCGCAAATACAAAACCTACTCTGCTCAGAAATCGGTCCTGGAATGCACTCCCATTCGCCGGTCAGAGCGTCTGAAAAGCAGAACTCCTTCCACCCCAAATTCTGAATCCAAAAACCTTCAACCGCCTTCGTCAGATACCAAAATAAAACGCTTATTCGAGTCAGAGGATGAGACGAGTCCCAAGAGCACAAGAAATTTGGCACGTTAT

Fln Alignment:

Contig10540___MGKSKSCKIEEKCIPLSPNNAYESLRMARIAENQARMAELGVQKQAGDLKAFFKVTKSPRKYKTYSAQKSVLECTPIRRSERLKSRTPSTPNSESKNLQPPSSDTKIKRLFESEDETSPKSTRNLARY
B8LRJ6_______________MGKSKSCKTEEKCLLLSPNNAYESLRMARIAENQARMAELGVQKQAGDLKAFFKVTKSPRKYKTGSAQKSVLEYTPIRRSERLKSRTPSTPNTESKSLQPPSSDTKIKRLFESDDEKSPKSKRNLARY

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
79		66		33	0.997452
192	30		70		1.0
424	87	12			0.992554
427		87	12		0.992554
434	87	12			0.992554
435			12	87	0.992554
446	71		28		1.0
448			40	60	1.0
456	60			40	1.0
458	40	60			1.0
459	40	60			1.0
460	60		40		1.0
461	60			40	1.0
464	40			60	1.0
465	40	60			1.0
471			60	40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain