SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene10495

Length: 707 nt

Origin of reads: Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene10495 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	65%
Blast2go	protein	-	-	1.9381e-38	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Metalloendopeptidases.	EC:3.4.24.-	-	1.9381e-38	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	1.9381e-38	78%
Blast2go	metalloendopeptidase activity	GO:0004222	Molecular Function	1.9381e-38	78%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	1.9381e-38	78%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	1.9381e-38	78%
Blast2go	mitochondrion	GO:0005739	Cellular Component	1.9381e-38	78%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M16, C-terminal	IPR007863	-	-
Sma3	Peptidase M16, core	IPR011237	-	-
Sma3	Peptidase M16, N-terminal	IPR011765	-	-

Full-Lengther Next Prediction

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
343	40		60		1.0
344	40			60	1.0
401	20			80	0.995493
415		71	28		1.0
420	28	71			1.0
425		28		71	1.0
430			28	71	1.0
431			28	71	1.0
434	28	71			1.0
435		28		71	1.0
439			28	71	1.0
463		80	20		0.995493
465		80	20		0.995493
470			25	75	0.996473
474	25	75			0.996473
475		75	25		0.996473
476			25	75	0.996473
480	75	25			0.996473
482	25			75	0.996473
483		25		75	0.996473
540		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain