SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene10479

Length: 1397 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene10479

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-synt_10 domain containing protein	-	-	3.99931e-42	27%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	58%
Blast2go	uncharacterized protein	-	-	0.0	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	67%

Source	InterPros	Term	Type	e value	Identity
Sma3	ATPase assembly factor ATP10, mitochondria	IPR007849	-	0.0	-
Sma3	Peptidase S28	IPR008758	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D7SN79

Fln msg:

Fln protein: MSLRTRLLPHLKAARCTAVTGSTGLSVFQRSSSYPLPQKTICRFFDFYQFGSKEAIEKERARLGDELNRGYFADISELKKHGGKVGFANKTLIPTIAAKRFPPLIVEFVDGRKHSLPVDVGNPNDHVESSDRTVNLHATLLCLSFRANAPAMIDSWTLPFLETFKTKSNVQLYEISFIDSWLLSLNPIKRLLLRTMRKSEISDGYQGLQRHVVYAFGDHYDLRKELNILNLLTGYIFLLDSKGRIRWQGFGIASDDEVSSMLSCASWLLEEQCK*

Protein Length: 276

Fln nts: CGTCGTGACCTTGGCTGTCACTCACTTTTTTAGCTCCTGTCCAAGTGGAAGTGAGCATTTTATGCATCATGAAAATAAACCGCTTTGGACCAGGATGCTTCTCCTACCTCTGTATAAAACTCGAGAAACCCGGGCTGATATAAAACCCTGAATAAAACGAGGGCAGAACGTCAATTCTTATGCAGCTGTCGATAAACCAGCGTTTAAGCTTTGCATGGAAAATTTGATCAATTCCCCCTTATTCGTTTTCTGGCCTCGAGGTACACAATAATAACAGGCAGTTCAAGGCGACTTCATTTTCGATTTACAGTTTCAGTGAAACA_-_ATGAGTTTGAGAACCAGGCTTCTACCCCACTTGAAGGCAGCAAGATGCACAGCTGTCACAGGGTCAACTGGATTATCAGTTTTTCAGCGGTCGTCTTCATATCCACTGCCACAGAAGACTATTTGCCGATTCTTTGACTTTTATCAGTTTGGCAGCAAGGAGGCCATCGAGAAGGAGCGCGCAAGGCTTGGGGACGAGTTAAATAGAGGCTATTTTGCAGACATTTCTGAGCTGAAGAAGCATGGTGGCAAGGTTGGATTTGCAAACAAGACTCTTATTCCAACTATTGCTGCTAAAAGGTTCCCTCCGTTAATTGTGGAATTTGTGGATGGTAGAAAACATTCTCTGCCTGTAGACGTTGGAAACCCAAATGACCATGTAGAGAGCAGCGACAGAACTGTCAATCTACATGCTACACTCCTATGTCTCTCTTTTCGTGCCAATGCTCCGGCTATGATTGACTCTTGGACTCTACCATTTCTGGAAACCTTCAAAACTAAATCAAATGTCCAATTGTATGAGATATCTTTTATAGATTCGTGGCTGTTATCGCTTAATCCTATTAAGCGTTTGCTTCTCCGTACAATGCGGAAATCTGAAATCAGCGATGGTTATCAGGGTCTTCAGAGACATGTTGTCTATGCATTTGGTGATCATTATGACTTGAGGAAAGAGCTCAACATATTGAACCTTCTAACAGGTTATATATTTTTGCTAGACAGCAAAGGTAGAATACGCTGGCAAGGTTTTGGGATAGCTTCAGATGACGAGGTGTCGTCAATGCTTTCATGTGCGTCTTGGCTACTTGAAGAGCAATGCAAGTAG___TTATTGTAATTTCTATCGATGTGGTTCACATTTCTCATGAATCTAACTGTTATTTGGAAATTAATATGGGCTTCCTACCAATTAGTGAGTCTCCACAGCTTCGAGTCTTTTGAAAATTAGACTTTCCAACTAATAATGGATATGGCATATATATGTAAAATCATCAATTCTTTCACGTATGTCTTGGCTACTGGCTATTTGCTGTTGGAATCTACTGATTTGGTTCATATTTTTTATGATCTCACCATT

Fln Alignment:

Contig10479___SYPLPQKTICRFFDFYQFGSKEAIEKERARLGDELNRGYFADISELKKHGGKVGFANKTLIPTIAAKRFPPLIVEFVDGRKHSLPVDVGNPNDHVESSDRTVNLHATLLCLSFRANAPAMIDSWTLPFLETFKTKSNVQLYEISFIDSWLLSLNPIKRLLLRTMRKSEISDGYQGLQRHVVYAFGDHYDLRKELNILNLLTGYIFLLDSKGRIRWQGFGIASDDEVSSMLSCASWLLEEQ
D7SN79_______________SHHLAHRTSTRFLDIYQLGNKEAFEKERARLADEMNRGYFADMSEFKQHGGKIAMANKIIIPAMAAMKFPALEVNYSDGRSLKLPI---SSHGNEAGTSKLDIPKASLLCLSFRASSQAMIDSWSKPFFDAFSDSKNVQLYEVSFVDSWFLSLNPIKRLLLRIMKKSK-PDGKSVLQRQIVYSFGDHYYFRKELKILNLLTGYMFLVDKFGRIRWQGFGLAAEEELASLLSCTTLLLEEK

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
843		60	40		1.0
1059	85	14			0.993533
1066	85	14			0.993533
1068	85			14	0.993533
1069		85	14		0.993533
1074			83	16	0.994512
1077	83			16	0.994512
1078		16	83		0.994512
1079	16		83		0.994512
1137	88		11		0.923564
1150		11		88	0.923564
1179		29	70		1.0
1180		29		70	1.0
1197		31	68		1.0
1217	66			33	1.0
1270	25		75		0.996473
1306		25		75	0.996473
1307	75			25	0.996473
1309	75	25			0.996473
1310			25	75	0.996473
1311	75	25			0.996473
1336	33		66		0.997452
1361	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain