SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene10456

Length: 2884 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene10456
CGTCGTGAACGTAGTGTAACCATTCCTGAGACGGTTCGAAGACAGCGAGGGTAGTTCTGAACTTCCTGAAGCGCTGTCGCGGTCAGCGAGACTTACCACGAATCAGTTGTAGCCGCGAATTATTTGAGGAAGCAAGGAACAATTTTTGAATGCCAACTGGTTACAAAGAATCTGAGCCCACACAGCGCAAGTCAAGGCAGCCGAGGTCTCTAGTGAATATCAGTACCAGACTTGAAGGGTGATATAATCACAGAGAAAGACAACGACCAGTTTGAAAGCTCGGGAAGGGCATTACGATAACAACTGAAGTTTCGCCCAGAAACACACAGTGGCGATCACTTTTCTGGTTACTTAGGAATAAAATTCAGGTCAATTGGGTTCATTCATTTGATTTCGTGGCCGTTTTAAACCCTATGCATTTGAGCTTAAAGGCTTCCTTATTGTCTCGGAAATGAAGAGAAAAGCTGAGTCAAGGCACCTACAACGTTCTGCTGTGAGGGGAGGAGGTCTTCGTAATGTCTCAAAAAAATCACATCCATTGGAGTTTCCTCCAGCTAATGAACCTTTAGATGATAGTTCAGAGGAGAGTGAAGTTGACACAGATGAAGAAAAACAGAGAGACCGTTCTATGTATCATACCTTATTATCATCTTTAAAATCAAGTTGTGGATCTTTTGCCCATGTTTATGATAAGAGGCAGAGAGAACAGGAAGGTGTCAGTAGTGCAGAAGAAGATGAGCAAGACACTGAACTTGAGTCTGAAAGTGATGTTTCAGGTGATGCAGAAGTGGAAGAAGTTGGTACAGAACCAATGGAATCCAGTGAGGAAGAGATTGTAGAATCAGAAGAGGAGAAAGATATAGAAGGGACAGCTGGGCAGTTAGCTGTAGATGATGAAGATGACGTAGAGGATGATGATGAAGATGGAGAAAATAATGAAGCCTCTACGAGTATTAGTTCATTTAAATTGCATACAACACACACACTGGCTGAAGCAGATGTTCAAAAGCTGAAGGAGGGGAAAAGAAAGTTTAAAGCTGAGTTTCCTGCTCATGGAATGCCATTGTGCAAATGGACAACTACTAATGATTCTCTTCACAAGGAGGATGATAGACTTGCAAGTTATGGTGTGCAATCACGTTTACAGAAACATTGGCAAAGTATTCATAAAAAGCCTGATTGTGGCGATTTTACTTCTGCTAAACAAAGCCAATTCTTTTCTTTATGTAATAGCTATCAAGATATATTGCATTCAAACAAAAATGCATTTATGTGTGGAGGTCAAGATGACGACTCAAGCATTATGGATGCATACCTTTTGCATATTTTGAATCATATCTATAAAACAAGAGATCTTGTGACCAAAAACAGTGCAAGACTGAGTCAACAGGCTGAGCAAAAAGATAAGACAACAGATGCAACTGGACTATCACAAGACCAAGGGTTTACTCGCCCAAAGGTCCTCATTGTGCTGCCACTTCGAAGCATTGCCCTCAGAACTGTGAAGAGTTTGATAGATCTGATCCCATCTTCGTGCAAAGTCAGCATTGAGTATAAGAATAGGCTTTTTGATGAATTTGGTAATGGAGAGGATGAAGACAATGAAGCATTAAAGGAAGGATCAAAGTCTGGAGGCCAACATAAAGAAAAATCTCAGATATCTTCAAAGCCTGCTGATTTTCAAGCTCTTTTTGGTGGGAACAATGATGATCATTTTCGGATAGGAATCAAAATTACAAAGAAAAGTGTGAAGCTTTACAGCGATTTCTATTCTTCAGACATTATTGTGGCTTCTCCAGTTGGCTTAATTACTAAAATTGGAGAAGCAGAGAGTGAGAAGAATAAAGATGTGGATTTCTTGTCTTCCATAGAGATTTTAGTTATTGACTGTGCAGATGTCATTCTGATGCAGAATTGGTCCCATGTTATTTCTGTTGTTGACCAATTAAACATGATACCGACCAAGCAACATGGCACTGATTTCATGCGGATCCGAGAGTGGTATTTGAATGGACAGGCACGCTACTATCGACAAACAATTCTTCTATCAAATTTTGTTAATGCAGAAATAAATGCATTATTCAATCGATCTTGTCTTAACTATCGAGGGAAGGTAAAGTTGTTATCCTCGTATGGTGGTGTTCTTCCGAAGGTGGTTCTTCAAGTACGCCAGGTTTATGAGCGTTTTGATTGCAAATCTGCATTAGATGTCGATGATGAGCGATTCAACTTTTTTGTTAAGAAGGTGTTCCCAAAAATCAAGGATCCACTTCAGGGTGGTATCATGGTATTTATAAGTTCGTACTTTGACTTTGTTCGGCTACGAAATTACATGAAATCTCAGGACACCTCATTTTGCTTGGTTGGCGAATATACAAAACAGAGTGATATTTCACGTGGACGAACTTGGTTTTTCCATGGGGAACGCAAAATCATGCTTTATACAGAGCGTGCTCATTTCTATCACAGATATAAGATACGGGGAATACGTGATCTGATCTTTTACTCCCTTCCAGAGAGAAATGATTTTTATGCCGAGCTTACGAATATGTTTGAAGGGGTTGGTAATCCTACCTGCACGGTCCTTTTTTCACGATTTGATAGTTTGCGGCTTGAGAGAATCGTGGGAACATCTTCAGCCAAAAAAATGCTAAACTCAGAGAAAAAGACTTTCATGTTTTGTTAAAGAGACGTACTGCATACAAATATTGCCGTCTTTACGAAAATAGTGCCATCTTGATTGGGTACTAGCCCATTTTTTTGGGTCTAATTATTTTTTACAGATGCAAGATTTGCATCTGTGCCAATTTTGCTTTGTGAAGCCAATCGAACAAGCTACAATATTTTGGTTCTCTTAAAAATCAATTTATGGTTGTGATTTCAT

Ace file of the UniGene sp_v2.0_unigene10456

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DUF1253 multi-domain protein	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	60%
Blast2go	digestive organ expansion factor-like protein	-	-	69%

Source	GOs	Term	Type	Identity
Blast2go	embryo development	GO:0009790	Biological Process	69%
Blast2go	embryo sac development	GO:0009553	Biological Process	69%
Blast2go	rRNA transcription	GO:0009303	Biological Process	69%
Blast2go	nucleolus	GO:0005730	Cellular Component	69%
Blast2go	plastid	GO:0009536	Cellular Component	69%

Source	InterPros	Term	Type	e value	Identity
Sma3	Forkhead-associated (FHA) domain	IPR000253	-	0.0	-
Sma3	Digestive organ expansion factor, predicted	IPR010678	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D7UBL1

Fln msg:

Fln protein: MKRKAESRHLQRSAVRGGGLRNVSKKSHPLEFPPANEPLDDSSEESEVDTDEEKQRDRSMYHTLLSSLKSSCGSFAHVYDKRQREQEGVSSAEEDEQDTELESESDVSGDAEVEEVGTEPMESSEEEIVESEEEKDIEGTAGQLAVDDEDDVEDDDEDGENNEASTSISSFKLHTTHTLAEADVQKLKEGKRKFKAEFPAHGMPLCKWTTTNDSLHKEDDRLASYGVQSRLQKHWQSIHKKPDCGDFTSAKQSQFFSLCNSYQDILHSNKNAFMCGGQDDDSSIMDAYLLHILNHIYKTRDLVTKNSARLSQQAEQKDKTTDATGLSQDQGFTRPKVLIVLPLRSIALRTVKSLIDLIPSSCKVSIEYKNRLFDEFGNGEDEDNEALKEGSKSGGQHKEKSQISSKPADFQALFGGNNDDHFRIGIKITKKSVKLYSDFYSSDIIVASPVGLITKIGEAESEKNKDVDFLSSIEILVIDCADVILMQNWSHVISVVDQLNMIPTKQHGTDFMRIREWYLNGQARYYRQTILLSNFVNAEINALFNRSCLNYRGKVKLLSSYGGVLPKVVLQVRQVYERFDCKSALDVDDERFNFFVKKVFPKIKDPLQGGIMVFISSYFDFVRLRNYMKSQDTSFCLVGEYTKQSDISRGRTWFFHGERKIMLYTERAHFYHRYKIRGIRDLIFYSLPERNDFYAELTNMFEGVGNPTCTVLFSRFDSLRLERIVGTSSAKKMLNSEKKTFMFC*

Protein Length: 746

Fln nts: CGTCGTGAACGTAGTGTAACCATTCCTGAGACGGTTCGAAGACAGCGAGGGTAGTTCTGAACTTCCTGAAGCGCTGTCGCGGTCAGCGAGACTTACCACGAATCAGTTGTAGCCGCGAATTATTTGAGGAAGCAAGGAACAATTTTTGAATGCCAACTGGTTACAAAGAATCTGAGCCCACACAGCGCAAGTCAAGGCAGCCGAGGTCTCTAGTGAATATCAGTACCAGACTTGAAGGGTGATATAATCACAGAGAAAGACAACGACCAGTTTGAAAGCTCGGGAAGGGCATTACGATAACAACTGAAGTTTCGCCCAGAAACACACAGTGGCGATCACTTTTCTGGTTACTTAGGAATAAAATTCAGGTCAATTGGGTTCATTCATTTGATTTCGTGGCCGTTTTAAACCCTATGCATTTGAGCTTAAAGGCTTCCTTATTGTCTCGGAA_-_ATGAAGAGAAAAGCTGAGTCAAGGCACCTACAACGTTCTGCTGTGAGGGGAGGAGGTCTTCGTAATGTCTCAAAAAAATCACATCCATTGGAGTTTCCTCCAGCTAATGAACCTTTAGATGATAGTTCAGAGGAGAGTGAAGTTGACACAGATGAAGAAAAACAGAGAGACCGTTCTATGTATCATACCTTATTATCATCTTTAAAATCAAGTTGTGGATCTTTTGCCCATGTTTATGATAAGAGGCAGAGAGAACAGGAAGGTGTCAGTAGTGCAGAAGAAGATGAGCAAGACACTGAACTTGAGTCTGAAAGTGATGTTTCAGGTGATGCAGAAGTGGAAGAAGTTGGTACAGAACCAATGGAATCCAGTGAGGAAGAGATTGTAGAATCAGAAGAGGAGAAAGATATAGAAGGGACAGCTGGGCAGTTAGCTGTAGATGATGAAGATGACGTAGAGGATGATGATGAAGATGGAGAAAATAATGAAGCCTCTACGAGTATTAGTTCATTTAAATTGCATACAACACACACACTGGCTGAAGCAGATGTTCAAAAGCTGAAGGAGGGGAAAAGAAAGTTTAAAGCTGAGTTTCCTGCTCATGGAATGCCATTGTGCAAATGGACAACTACTAATGATTCTCTTCACAAGGAGGATGATAGACTTGCAAGTTATGGTGTGCAATCACGTTTACAGAAACATTGGCAAAGTATTCATAAAAAGCCTGATTGTGGCGATTTTACTTCTGCTAAACAAAGCCAATTCTTTTCTTTATGTAATAGCTATCAAGATATATTGCATTCAAACAAAAATGCATTTATGTGTGGAGGTCAAGATGACGACTCAAGCATTATGGATGCATACCTTTTGCATATTTTGAATCATATCTATAAAACAAGAGATCTTGTGACCAAAAACAGTGCAAGACTGAGTCAACAGGCTGAGCAAAAAGATAAGACAACAGATGCAACTGGACTATCACAAGACCAAGGGTTTACTCGCCCAAAGGTCCTCATTGTGCTGCCACTTCGAAGCATTGCCCTCAGAACTGTGAAGAGTTTGATAGATCTGATCCCATCTTCGTGCAAAGTCAGCATTGAGTATAAGAATAGGCTTTTTGATGAATTTGGTAATGGAGAGGATGAAGACAATGAAGCATTAAAGGAAGGATCAAAGTCTGGAGGCCAACATAAAGAAAAATCTCAGATATCTTCAAAGCCTGCTGATTTTCAAGCTCTTTTTGGTGGGAACAATGATGATCATTTTCGGATAGGAATCAAAATTACAAAGAAAAGTGTGAAGCTTTACAGCGATTTCTATTCTTCAGACATTATTGTGGCTTCTCCAGTTGGCTTAATTACTAAAATTGGAGAAGCAGAGAGTGAGAAGAATAAAGATGTGGATTTCTTGTCTTCCATAGAGATTTTAGTTATTGACTGTGCAGATGTCATTCTGATGCAGAATTGGTCCCATGTTATTTCTGTTGTTGACCAATTAAACATGATACCGACCAAGCAACATGGCACTGATTTCATGCGGATCCGAGAGTGGTATTTGAATGGACAGGCACGCTACTATCGACAAACAATTCTTCTATCAAATTTTGTTAATGCAGAAATAAATGCATTATTCAATCGATCTTGTCTTAACTATCGAGGGAAGGTAAAGTTGTTATCCTCGTATGGTGGTGTTCTTCCGAAGGTGGTTCTTCAAGTACGCCAGGTTTATGAGCGTTTTGATTGCAAATCTGCATTAGATGTCGATGATGAGCGATTCAACTTTTTTGTTAAGAAGGTGTTCCCAAAAATCAAGGATCCACTTCAGGGTGGTATCATGGTATTTATAAGTTCGTACTTTGACTTTGTTCGGCTACGAAATTACATGAAATCTCAGGACACCTCATTTTGCTTGGTTGGCGAATATACAAAACAGAGTGATATTTCACGTGGACGAACTTGGTTTTTCCATGGGGAACGCAAAATCATGCTTTATACAGAGCGTGCTCATTTCTATCACAGATATAAGATACGGGGAATACGTGATCTGATCTTTTACTCCCTTCCAGAGAGAAATGATTTTTATGCCGAGCTTACGAATATGTTTGAAGGGGTTGGTAATCCTACCTGCACGGTCCTTTTTTCACGATTTGATAGTTTGCGGCTTGAGAGAATCGTGGGAACATCTTCAGCCAAAAAAATGCTAAACTCAGAGAAAAAGACTTTCATGTTTTGTTAA___AGAGACGTACTGCATACAAATATTGCCGTCTTTACGAAAATAGTGCCATCTTGATTGGGTACTAGCCCATTTTTTTGGGTCTAATTATTTTTTACAGATGCAAGATTTGCATCTGTGCCAATTTTGCTTTGTGAAGCCAATCGAACAAGCTACAATATTTTGGTTCTCTTAAAAATCAATTTATGGTTGTGATTTCAT

Fln Alignment:

Contig10456___ASTSISSFKLHTTHTLAEADVQKLKEGKRKFKAEFPAHGMPLCKWTTTNDSLHKEDDRLASYGVQSRLQKHWQSIHKKPDCGDFTSAKQSQFFSLCNSYQDILHSNKNAFMCGGQDDDSSIMDAYLLHILNHIYKTRDLVTKNSARLSQQAEQKDKTTDATGLSQDQGFTRPKVLIVLPLRSIALRTVKSLIDLIPSSCKVSIEYKNRLXXXXXXXXXXXXXALKEGSKSGGQHKEKS-QISSKPADFQALFGGNNDDHFRIGIKITKKSVKLYSDFYSSDIIVASPVGLITKIGEAESEKNKDVDFLSSIEILVIDCADVILMQNWSHVISVVDQLNMIPTKQHGTDFMRIREWYLNGQARYYRQTILLSNFVNAEINALFNRSCLNYRGKVKLLSSYGGVLPKVVLQVRQVYERFDCKSALDVDDERFNFFVKKVFPKIKDPLQGGIMVFISSYFDFVRLRNYMKSQDTSFCLVGEYTKQSDISRGRTWFFHGERKIMLYTERAHFYHRYKIRGIRDLIFYSLPERNDFYAELTNMFEGVGNPTCTVLFSRFDSLRLERIVGTSSAKKMLNSEKKTFMFC
D7UBL1_______________ASESTSSFTSHVGHKLSKEEVDNLTRRKWKYNWEMPAFDMSSCKWMGTGESFLKDVNTSSGYDLKLKLYKHWLENYKTSGGNDFHSSKQRLFFSLCNSYRDILYCNKKPFYLKGQEEDSCIMDAYIMHALNHIFRTGDLVTKNDSKVAKHQETVKEEILTGDSFLDHGFTRPKVLILLPLASIALRVVKRLIQLTPSSSKVNVEHIDRFSDEFGTGVVEDDQEQNELFQKVQDYENSIVQKSSKPSDFQALFGANNNDHFMIGIKFTRRTIKLYSDFYSSDMIIASPLGLITKIGEAEVEKEKDVDYLSSIEVLVIDHADVISMQNWSHVNSVVEQLNRIPSKQHGTDIMRIRQWYLDGHAQFYRQTIILGSYLNPDMNASFNHHCVNYQGKVKLVCEYKGALAKVLLQVRQIYERFDADSVVDSDDARFEYFTTKVFPKIKDSIQGGIMLFVSSYFEYVRIRNFLKSQNASFCLLGEYTKQSDISRARVWFFEGKRKIMLYTERAHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSHNMTCTVLFSRFDQFRLERIVGSGPAKRMVASEKNVFVFC

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
1589			11	88	0.923564
1590			11	88	0.923564
1791		57		42	1.0
2133	20		80		0.995493
2374	10		90		0.90298
2376			10	90	0.90298
2416	88			11	0.923564
2417		88		11	0.923564
2447	11			88	0.923564
2448	11		88		0.923564
2450			13	80	0.999961
2452		13		86	0.999973
2453	86		13		0.999973
2457	80		6	13	0.999961
2458			80	20	1.0
2459	86		13		0.999973
2464		20	80		1.0
2761	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain