SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene10446

Length: 1139 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene10446

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] ref\|NP_001190883.1\| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] emb\|CAB40759.1\| putative protein [Arabidopsis thaliana] emb\|CAB79907.1\| putative	-	-	2.0e-12	75%
FL-Next	tr=Putative uncharacterized protein; subsp. trichocarpa).	-	-	0.0	75%
Blast2go	armadillo beta-catenin-like repeat-containing protein	-	-	2.22157e-14	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	2.22157e-14	87%
Blast2go	ligase activity	GO:0016874	Molecular Function	2.22157e-14	87%
Blast2go	chloroplast	GO:0009507	Cellular Component	2.22157e-14	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	Armadillo	IPR000225	-	0.0	-
Sma3	Armadillo-like helical	IPR011989	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
668	25			75	0.996473
670	25	75			0.996473
671		75		25	0.996473
672	75			25	0.996473
688	66	33			1.0
692	66		33		1.0
694			33	66	1.0
696	66	33			1.0
697	66	33			1.0
702	66	33			1.0
705	66			33	1.0
712	33			66	1.0
834	80	20			0.995493
839			80	20	0.995493
840			20	80	0.995493
846			20	80	0.995493
847	80		20		0.995493
848	80	20			0.995493
851	80			20	0.995493
852		20		80	0.995493
857	20			80	0.995493
955	33			66	0.997452
959	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain