SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene10426

Length: 722 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene10426

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	replication factor C 110 kDa subunit [Oryza sativa Japonica Group]	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	replication factor c subunit 1-like	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	response to DNA damage stimulus	GO:0006974	Biological Process	71%
Blast2go	regulation of chromatin silencing	GO:0031935	Biological Process	71%
Blast2go	regulation of histone H3-K9 methylation	GO:0051570	Biological Process	71%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	71%
Blast2go	DNA replication	GO:0006260	Biological Process	71%
Blast2go	DNA clamp loader activity	GO:0003689	Molecular Function	71%
Blast2go	ATP binding	GO:0005524	Molecular Function	71%
Blast2go	DNA replication factor C complex	GO:0005663	Cellular Component	71%

Source	InterPros	Term	Type	Identity
Sma3	BRCT domain	IPR001357	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-3	IPR011703	-	-
Sma3	DNA replication factor C, large subunit	IPR012178	-	-
Sma3	DNA replication factor RFC1, C-terminal	IPR013725	-	-

Full-Lengther Next Prediction

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
423	80			20	0.995493
425	80		20		0.995493
490		83		16	0.994512
609	20		80		0.995493
611			20	80	0.995493
612			20	80	0.995493
613			20	40	1.0
681	66			33	0.997452
683		33		66	0.997452
684	66		33		0.997452
685	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain