SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene10412

Length: 933 nt

Origin of reads: Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene10412

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative AP2/EREBP transcription factor [Arabidopsis thaliana]	-	-	2.0e-16	60%
FL-Next	tr=DREB protein; Taxus cuspidata (Japanese yew).	-	-	0.0	64%
Blast2go	ap2 erf domain-containing transcription factor	-	-	8.11769e-19	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to trehalose stimulus	GO:0010353	Biological Process	8.11769e-19	85%
Blast2go	response to glucose stimulus	GO:0009749	Biological Process	8.11769e-19	85%
Blast2go	response to sucrose stimulus	GO:0009744	Biological Process	8.11769e-19	85%
Blast2go	zinc ion transmembrane transport	GO:0071577	Biological Process	8.11769e-19	85%
Blast2go	response to water deprivation	GO:0009414	Biological Process	8.11769e-19	85%
Blast2go	starch catabolic process	GO:0005983	Biological Process	8.11769e-19	85%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	8.11769e-19	85%
Blast2go	response to osmotic stress	GO:0006970	Biological Process	8.11769e-19	85%
Blast2go	mitochondria-nucleus signaling pathway	GO:0031930	Biological Process	8.11769e-19	85%
Blast2go	regulation of protein localization	GO:0032880	Biological Process	8.11769e-19	85%
Blast2go	lateral root development	GO:0048527	Biological Process	8.11769e-19	85%
Blast2go	abscisic acid mediated signaling pathway	GO:0009738	Biological Process	8.11769e-19	85%
Blast2go	hexokinase-dependent signaling	GO:0009747	Biological Process	8.11769e-19	85%
Blast2go	regulation of triglyceride catabolic process	GO:0010896	Biological Process	8.11769e-19	85%
Blast2go	seed development	GO:0048316	Biological Process	8.11769e-19	85%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	8.11769e-19	85%
Blast2go	zinc ion transmembrane transporter activity	GO:0005385	Molecular Function	8.11769e-19	85%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	8.11769e-19	85%
Blast2go	integral to membrane	GO:0016021	Cellular Component	8.11769e-19	85%
Blast2go	nucleus	GO:0005634	Cellular Component	8.11769e-19	85%

Source	InterPros	Term	Type	Identity
Sma3	SNF2-related	IPR000330	-	-
Sma3	AP2/ERF domain	IPR001471	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3		IPR004348	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-

Full-Lengther Next Prediction

SNPs (tot: 56)

Position	A %	C %	G %	T %	Probability
16		25		75	0.996473
98		14		85	0.993533
99			14	85	0.993533
101		14		85	0.993533
103	85			14	0.993533
107		14	85		0.993533
109			85	14	0.993533
110		85		14	0.993533
111	85		14		0.993533
112	85		14		0.993533
113	85	14			0.993533
114			85	14	0.993533
116			85	14	0.993533
117	85	14			0.993533
119		14	85		0.993533
120	85			14	0.993533
121		14	85		0.993533
250	12	87			0.992554
251			87	12	0.992554
252		87	12		0.992554
253			12	87	0.992554
254			12	87	0.992554
255		87	12		0.992554
392		20		80	0.999996
395	80	20			0.999996
396			20	80	0.999996
397			80	20	0.999996
403		80		20	0.999996
404			80	20	0.999996
405	80		20		0.999996
429			11	88	0.923564
436		87	12		0.992554
437	12		87		0.992554
440		87		12	0.992554
442		85	14		0.993533
444		14	71	14	0.984337
447		14		85	0.993533
450	14	85			0.993533
476			20	80	0.995493
479			20	80	0.995493
482		80	20		0.995493
485		20	80		0.995493
486		80		20	0.995493
487		80		20	0.995493
488		80	20		0.995493
491		80		20	0.995493
493			80	20	0.995493
495	20	80			0.995493
498	80	20			0.995493
548		14		85	0.993533
551		85	14		0.993533
552			14	85	0.993533
554		85		14	0.993533
556			85	14	0.993533
558	14	85			0.993533
716		80		20	0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
789	807	GTCCCA GTCCCA GTCCCA G	19

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain