SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene10389

Length: 1686 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene10389

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] ref\|NP_001031930.1\| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] gb\|AAM91576.1\| putative protein [Arabidopsis thaliana] gb\|AAP13437.1\| At5g23590 [Ar	-	-	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	dnaj heat shock n-terminal domain-containing protein	-	-	63%

Source	GOs	Term	Type	Identity
Blast2go	protein folding	GO:0006457	Biological Process	63%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	63%
Blast2go	unfolded protein binding	GO:0051082	Molecular Function	63%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	63%
Blast2go	heat shock protein binding	GO:0031072	Molecular Function	63%

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-
Sma3		IPR015609	-	-
Sma3	Heat shock protein DnaJ	IPR003095	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NX26

Fln msg:

Fln protein: MEEDHYQVLGLKSGRDGSKLSVAEIRKAYRARALVCHPDKRPDDPNAAALFQKIQTAYELLTDETARKAFDEFVRLRDERLNREHQRASDVSSKRRKMMDELNEREKAFDARKQKEENDKAEEDRAAKKLREEIARIRAKHAQKSFGFAQSFAEATKKETKADSVQSMDKDKMVKATWNSLAGCDDYSAERLREIFERFGTVEDVVIRRKSLKKKGSAIIVMGSKAEADVATRSQCGDLSNPLLVLPLLSSTTNSGYQFEDKQAEADNDGELNHIVGAGYHAYEDSVLKKLQKAAEKAKLNKQAQL*

Protein Length: 308

Fln nts: ATGGGGATTGCCGAGATGACCATTACGATTTTAAGAACTTTGTCACGGAAATGGGGGACTGAAGAGGGCGAGTCGCGACGACCTCGAGAGGTTACGAGGCATCTGATTCAGGGATTTATGAGATTTTTCCTTCCAGCCGTCGACACACTCATGAGCTTTTTCCCTCCGGCCGTCTTGAGCGAGTGGGGAAAAGAAGCGGACGGGAACGCATGGTTCGCTTTTCTATATCCATGTCAGATCAAAACTAATGCACAGCTCTAGCAGTTTGTTACAAACTAAACACAGACCTTATTAACTTGTGTTTTTCGGTGAAAGGATGCGGCAATACCACGCAGAGGCAAATATAAACTTTGGGCTCGCCTTTTCGTAGCTAACAGTGCTGCTAAATTTCTTCATTTATTTGAGAGCTTCAGGGGTTTGAGGCTCTTGAAGCT_-_ATGGAGGAGGATCACTACCAGGTGTTAGGGTTAAAGTCAGGCCGAGATGGTTCAAAGCTTTCAGTGGCCGAGATACGCAAGGCCTACAGAGCCCGAGCCCTTGTTTGCCATCCCGACAAAAGGCCCGACGACCCCAACGCGGCTGCCCTCTTCCAGAAGATACAAACCGCCTACGAGCTTCTCACCGACGAGACCGCTCGCAAGGCCTTCGATGAATTCGTACGCCTGAGGGATGAAAGGCTCAATAGGGAACACCAGAGGGCCTCCGATGTCTCTTCGAAGCGAAGGAAAATGATGGACGAGCTCAACGAGCGGGAAAAGGCCTTCGACGCACGGAAGCAGAAGGAGGAGAATGACAAGGCTGAAGAGGACAGAGCCGCGAAGAAGCTCCGAGAGGAAATTGCCAGGATTCGAGCCAAGCACGCGCAGAAATCCTTCGGTTTTGCGCAGTCGTTTGCCGAGGCTACGAAGAAGGAGACGAAGGCGGATTCTGTGCAGTCGATGGACAAGGACAAAATGGTGAAAGCTACGTGGAATTCATTGGCTGGATGTGACGATTATAGTGCTGAGAGGCTTCGGGAAATCTTTGAGCGATTTGGGACGGTCGAAGATGTCGTTATTCGTCGCAAGAGTCTCAAGAAGAAAGGATCTGCCATAATTGTTATGGGCTCCAAGGCTGAAGCGGATGTTGCCACTCGAAGCCAATGTGGGGATCTTTCAAATCCTTTGCTTGTGCTACCTCTATTGTCATCAACAACTAATTCAGGATATCAATTTGAAGATAAGCAAGCAGAAGCCGACAATGATGGAGAATTAAACCACATTGTTGGTGCAGGATATCATGCCTATGAGGATTCTGTTTTAAAGAAACTGCAGAAGGCTGCTGAGAAAGCAAAATTAAACAAACAAGCACAACTGTGA___AATTGGTTTGGATTGTTGGTGGCTTGGATCTCGAGCTTAGTTAAAATGTTGTAAATTCTGGTTGTGACGTTTGAGCAACATTTTTCTTATGTTGCTCTCGTAGAAACTGACAATTTGTTATAGCTTGTTTACCCATTTGGTCATCACAAATGCATTTAATCAACCTGTCTAATAGGCTGCGCGTTTGGAGGCATTTTTGTATATTATCAATTCGATATTTGTCTATACCATTTTTTTCAGATAGAAAGCTCCTACTATTTCAAGTACATTTTTTGTTTTAAAAAAATGTATGCCAGGTTATATTAAATTTAAAGAATAAAGGGTCGTTATC

Fln Alignment:

Contig10389___MEEDHYQVLGLKSGRDGSKLSVAEIRKAYRARALVCHPDKRPDDPNAAALFQKIQTAYELLTDETARKAFDEFVRLRDERLNREHQRASDVSSKRRKMMDELNEREKAFDARKQKEENDKAEEDRAAKKLREEIARIRAKHAQKSFGFAQSFAEATKKETKADSVQSMDKDKMVKATWNSLAGCDDYSAERLREIFERFGTVEDVVIRRKSLKKKGSAIIVMGSKAEADVATRSQCGDXXXXXXXXXXXXXXXXXGYQFEDKQAEADNDGELNHIVGAGYHAYEDSV
A9NX26_______________MEEDHYQVLGLQSGREGSKLSVADIRKAYRARALVCHPDKRPDDPNAAALFQKIQTAYELLTDETARKAFDEFVRLRDERLSREHQRASDVSSKRRKMMDELNEREKAFDAQKQKEENDKAEEDRAAKKLREEIARIRAKHAQKSFNFAQSFAEAAKKESKADSGQALDKEKMVKATWNSLSGCGDYSAERLREIFERFGTVEDVVIRRKGFKKKGSAIIVMGSKAEADAATRSPCGDLSNPLLVLPLLSSTTNSGYQFEDKQAEADNDGELNNIVGAGYHAYEDSV

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
291		88	11		0.923564
293		11		88	0.923564
294	88		11		0.923564
296			11	88	0.923564
298	88	11			0.923564
306		12		87	0.992554
307	12			87	0.992554
308		12		87	0.992554
333	71		28		1.0
407	80		20		0.995493
503	33		66		0.997452
504		33	66		0.997452
505	33	66			0.997452
506		66		33	0.997452
507			66	33	0.997452
852	14		85		0.993533
881			20	80	0.995493
882			80	20	0.995493
1121		90		10	0.90298
1299		10		90	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain