SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene10352

Length: 725 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene10352 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to glucose-inhibited division A family protein n=1 Tax=Vitis vinifera RepID=UPI0001983194	-	-	4.0e-37	70%
FL-Next	tr=Glucose inhibited division protein A, putative; Ricinus communis (Castor bean).	-	-	0.0	73%
Blast2go	trna uridine 5-carboxymethylaminomethyl modification enzyme -like	-	-	1.49939e-42	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Histidine kinase.	EC:2.7.13.3	-	1.49939e-42	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	phosphorylation	GO:0016310	Biological Process	1.49939e-42	79%
Blast2go	signal transduction	GO:0007165	Biological Process	1.49939e-42	79%
Blast2go	tRNA wobble uridine modification	GO:0002098	Biological Process	1.49939e-42	79%
Blast2go	protein histidine kinase activity	GO:0004673	Molecular Function	1.49939e-42	79%
Blast2go	signal transducer activity	GO:0004871	Molecular Function	1.49939e-42	79%
Blast2go	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	1.49939e-42	79%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	1.49939e-42	79%
Blast2go	chloroplast	GO:0009507	Cellular Component	1.49939e-42	79%

Source	InterPros	Term	Type	Identity
Sma3	Glucose-inhibited division protein A-related	IPR002218	-	-
Sma3	Glucose-inhibited division protein A	IPR004416	-	-
Sma3	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	IPR013027	-	-

Full-Lengther Next Prediction

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
573		12		87	0.992554
577	12	87			0.992554
634		25	75		0.996473
636		33		66	0.997452
637	33		66		0.997452
638			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain