SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene10296

Length: 2034 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene10296
GGAGGCCAGCTATAGGAAGAAAGTACAATTGATTCGCTCGGAATTGCTTCCGAGAATTTTGAGAAGATACAGCAAGATTGAATGTTTGGACTTATCTCTGTGCTCTCAGATCACAGACGAGGCTTTGGGGCACGTGGCTCAGATTATTGGGAATCATTTACTTTCCATCAGCCTTTCACAGCTGAGGAGGTTTACCCACTTGGGCCTTGCTGAGGTGGTTAAGAGTTGTCAGTCTTTGGTCGAAATCGATCTTTCCAATTGCACTGAAATAACCGATTATGATGCAGAAGCCATAGCACAGGCCCAGAAGTTGCAATCTTTGAAACTAGTGAAATGCAAGCAGATCACTGACATAGGTCTCGGATGCATAGCTGTTGGATGCAGTCAATTACAGACATTGAATCTCAAGTGGTGCGTGGGTGTCACAGACCTTGGAGTTGAGCTGGTTGTGGTAAAATGCAAGGATCTACGCAATCTTGATCTCTCTTATTTACAGATAACAAACAAATGTCTTGCCTCAATTGAGCATCTGAAGCATCTCGAGAACTTAGCATTAGTGGATGTGTTGGTGTGGGTGATGACGGCCTTACCTATCTCAGTAAATCTTTGCAGAGGCTTGATGTTTCAAAGTGTCGGAATGTCAGCTGCACAGGAATAATTTCCCTTGCAAGTGTTTCCTCACACTTGTGCCAGCTCACTCTTGCCTATTGCATACCAGTTACAAATGCACTTCTTGCCAGCTTTCAACATTTTGACAGACTGCAAACAATCAAATTTGATGGCTGTATGATTTCTAGCACTGCACTTGAGTCTATTGGGAAAAGTTGCAAGTCTCTGAGGGAAATAAGCTTAAGCAAGTGCATTGGAGTCACGGATAATGGAATATCTGCAATCGCAGCATGCTGTACAGAGCTGAACAAGTTAGACCTCACCTGCTGCGTGATCTAACTGACATTGCTATTAAGGCTGTTGCAACATCATGTAGATATCTCTCCTGCCTCATGATGGAATCCTGTGGCTTGGTTACGGAAAGAAGTTTGACTATGCTAGGAGAGGGATGTCCTTTACTTCGAGAACTTGACCTTACCGATTGTCGCATAAACGATAAAGGATTAAAATCCATTTCTAGGTGCTCTGAATTGATCACATTAAATCTAGGATTATGCTTAAATATATCTGCCGAGGGGATCATCCATATAGGAGCCTGTTGCTCAAATCTCCAAGAACTTGATTTGTACCGATCTGTAGGAATTCGTGATGCTGGATTAGAAGCAATTGCTAATGGTTGCCCGAGGTTAAGGAGTATTAATCTTTCATACTGCATAAATGTTACTGATTATGCAATGAAATCTCTCTCCCGATTGAAGAAACTTCATAATCTTGAAGTTCGAGGTTGTCCTGGCATCTCATCTGCTGGTCTTTCTGCAATAGCTTTAGGATGTAAGCGGTTAGTTGCATTGGATGTCAAAGGTTGTCACAATATTGATGATGCAGGAATATTGGCAATAACTAACTCATGCCAAAATTTACGACAGATAAATCTCTCTTACTGCCCAATCTCAGATGTTGGGTTGTCGACGTTGGCCAGGCTTAGTTGCTTGCAGAATATGAAGCTGGTTCATTTGAAGAATGTAACAGTGAATAGTTTTGCATCGGCTTTGCTGGATTGCGAGAGTTTAAAGAAACTCAAGCTTTTTGAAGATTTAAAGTTCATTTTACCACGTAGTCTAATCGAGTGCTTGGAAGCCCGTGGGTGCATTATTCGTTGGATGGATAAGCCTTTTGTGATTTAACTTGCATATATCGTATATGATCCAATACTGGAGGTTTTTAGAAAATGTACTATGTATCTGAAATTTTTTTCATAGGAACATCATGTTGCATACAGAAAGCACATTCATGAATGCTTGGAAATTGTTTGATCCTATTGTACTCTGAATTTTATGGGCACGCAAAATTTCAGATAGAAGGCATCTTGTAAGATGGAAATGAACAACCTTTTCTATCATATATACATTGAAGAGTTGGGTTTAT

Ace file of the UniGene sp_v2.0_unigene10296

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	F-box/LRR-repeat protein 3 [Arabidopsis thaliana] sp\|Q8RWU5.1\|FBL3_ARATH RecName: Full=F-box/LRR-repeat protein 3 gb\|AAM14053.1\| putative F-box protein family, AtFBL3 [Arabidopsis thaliana] gb\|AAM67471.1\| putative F-box family protein AtFBL3 [Arabidopsis	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	29%
Blast2go	f-box lrr-repeat protein 3-like	-	-	71%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	71%

Source	GOs	Term	Type	Identity
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	71%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	71%
Blast2go	plastid	GO:0009536	Cellular Component	71%

Source	InterPros	Term	Type	Identity
Sma3	Ribonuclease A	IPR001427	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Leucine-rich repeat, cysteine-containing subtype	IPR006553	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A998

Fln msg: Separated hits, possible frame ERROR between 559 and 787, and possible frame ERROR between 921 and 939, your sequence is longer than subject: 598 - 335

Fln protein: EASYRKKVQLIRSELLPRILRRYSKIECLDLSLCSQITDEALGHVAQIIGNHLLSISLSQLRRFTHLGLAEVVKSCQSLVEIDLSNCTEITDYDAEAIAQAQKLQSLKLVKCKQITDIGLGCIAVGCSQLQTLNLKWCVGVTDLGVELVVVKCKDLRNLDLSYLQITNKCLASIEHLKHLENLALxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxMISSTALESIGKSCKSLREISLSKCIGVTDNGISAIAACCTELNxxxxxxxRDLTDIAIKAVATSCRYLSCLMMESCGLVTERSLTMLGEGCPLLRELDLTDCRINDKGLKSISRCSELITLNLGLCLNISAEGIIHIGACCSNLQELDLYRSVGIRDAGLEAIANGCPRLRSINLSYCINVTDYAMKSLSRLKKLHNLEVRGCPGISSAGLSAIALGCKRLVALDVKGCHNIDDAGILAITNSCQNLRQINLSYCPISDVGLSTLARLSCLQNMKLVHLKNVTVNSFASALLDCESLKKLKLFEDLKFILPRSLIECLEARGCIIRWMDKPFVI*

Protein Length: 599

Fln nts: GGAGGCCAGCTATAGGAAGAAAGTACAATTGATTCGCTCGGAATTGCTTCCGAGAATTTTGAGAAGATACAGCAAGATTGAATGTTTGGACTTATCTCTGTGCTCTCAGATCACAGACGAGGCTTTGGGGCACGTGGCTCAGATTATTGGGAATCATTTACTTTCCATCAGCCTTTCACAGCTGAGGAGGTTTACCCACTTGGGCCTTGCTGAGGTGGTTAAGAGTTGTCAGTCTTTGGTCGAAATCGATCTTTCCAATTGCACTGAAATAACCGATTATGATGCAGAAGCCATAGCACAGGCCCAGAAGTTGCAATCTTTGAAACTAGTGAAATGCAAGCAGATCACTGACATAGGTCTCGGATGCATAGCTGTTGGATGCAGTCAATTACAGACATTGAATCTCAAGTGGTGCGTGGGTGTCACAGACCTTGGAGTTGAGCTGGTTGTGGTAAAATGCAAGGATCTACGCAATCTTGATCTCTCTTATTTACAGATAACAAACAAATGTCTTGCCTCAATTGAGCATCTGAAGCATCTCGAGAACTTAGCATTAGTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTATGATTTCTAGCACTGCACTTGAGTCTATTGGGAAAAGTTGCAAGTCTCTGAGGGAAATAAGCTTAAGCAAGTGCATTGGAGTCACGGATAATGGAATATCTGCAATCGCAGCATGCTGTACAGAGCTGAACAxxxxxxxxxxxxxxxxxxTGCGTGATCTAACTGACATTGCTATTAAGGCTGTTGCAACATCATGTAGATATCTCTCCTGCCTCATGATGGAATCCTGTGGCTTGGTTACGGAAAGAAGTTTGACTATGCTAGGAGAGGGATGTCCTTTACTTCGAGAACTTGACCTTACCGATTGTCGCATAAACGATAAAGGATTAAAATCCATTTCTAGGTGCTCTGAATTGATCACATTAAATCTAGGATTATGCTTAAATATATCTGCCGAGGGGATCATCCATATAGGAGCCTGTTGCTCAAATCTCCAAGAACTTGATTTGTACCGATCTGTAGGAATTCGTGATGCTGGATTAGAAGCAATTGCTAATGGTTGCCCGAGGTTAAGGAGTATTAATCTTTCATACTGCATAAATGTTACTGATTATGCAATGAAATCTCTCTCCCGATTGAAGAAACTTCATAATCTTGAAGTTCGAGGTTGTCCTGGCATCTCATCTGCTGGTCTTTCTGCAATAGCTTTAGGATGTAAGCGGTTAGTTGCATTGGATGTCAAAGGTTGTCACAATATTGATGATGCAGGAATATTGGCAATAACTAACTCATGCCAAAATTTACGACAGATAAATCTCTCTTACTGCCCAATCTCAGATGTTGGGTTGTCGACGTTGGCCAGGCTTAGTTGCTTGCAGAATATGAAGCTGGTTCATTTGAAGAATGTAACAGTGAATAGTTTTGCATCGGCTTTGCTGGATTGCGAGAGTTTAAAGAAACTCAAGCTTTTTGAAGATTTAAAGTTCATTTTACCACGTAGTCTAATCGAGTGCTTGGAAGCCCGTGGGTGCATTATTCGTTGGATGGATAAGCCTTTTGTGATTTAACTTGCATATATCGTATATGATCCAATACTGGAGGTTTTTAGAAAATGTACTATGTATCTGAAATTTTTTTCATAGGAACATCATGTTGCATACAGAAAGCACATTCATGAATGCTTGGAAATTGTTTGATCCTATTGTACTCTGAATTTTATGGGCACGCAAAATTTCAGATAGAAGGCATCTTGTAAGATGGAAATGAACAACCTTTTCTATCATATATACATTGAAGAGTTGGGTTTAT

Fln Alignment:

Contig10296___LRRYSKIECLDLSLCSQITDEALGHVAQIIGNHLLSISLSQLRRFTHLGLAEVVKSCQSLVEIDLSNCTEITDYDAEAIAQAQKLQSLKLVKCKQITDIGLGCIAVGCSQLQTLNLKWCVGVTDLGVELVVVKCKDLRNLDLSYLQITNKCLASIEHLKHLENLALVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxMISSTALESIGKSCKSLREISLSKCIGVTDNGISAIAACCTELNKxxxxxxRDLTDIAIKAVATSCRYLSCLMMESCGLVTERSLTMLGEGCPLLRELDLTDCRINDKGLKSISRCSELITLNLGLCLNISAEGIIHIGACCSNLQELDLYRSVGIRDAGLEAIANGCPRLRSINLSYCINVTDYAMKSLSRLKKLHNLEVRGCPGISSAGLSAIALGCKRLVALDVKGCHNIDDAGILAITNSCQNLRQINLSYCPISDVGLSTLARLSCLQNMKLVHLKNVTVNSFASALLDCESXXXXXXXXXXXXXXPRSLIECLEARGCIIRWMDKPFVI
D5A998_______________ISRCSELITLNLGFCLNISAEGIYHIGACCSN-LQELNLYRSVGTGDAGLEAIANGCPRLKSINISYCINVTDNSMKSISRLQKLHNLEIRGCPGISSAGLSAIALGCKRIVALDVKGCYNIDDAGILAIADSCQNLRQINVSYCPISDVGLSTLARLSCLQNMKLVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxMISSTALESIGKSCKSLREISLSKCIGVTDDGISAIAACCTELNKxxxxxxRDLTDIAIKAVATSCRYLSSFMMESCGLVTERSLTMLGEGCPFLQELDLTDCRINNTGLKSISRCSELITLNLGFCLNISAEGIYHIGACCSNLQELNLYRSVGTGDAGLEAIANGCPRLKSINISYCINVTDNSMKSISRLQKLHNLEIRGCPGISSAGLSAIALGCKRIVALDVKGCYNIDDAGILAIADSCQNLRQINVSYCPISDVGLSTLARLSCLQNMKLVHLKNVTVNGFASALLDCESLKKLKLFEGLKFILPRSLIECLEARGCSIRWMDKPFVI

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
197	14	85			0.993533
284	11		88		0.923564
285	11	11	11		0.944822
286	11	88			0.923564
297	16		83		0.994512
424		16		83	0.994512
508	75	25			0.996473
770	90		10		0.90298
1392	25			75	0.996473
1393		75		25	0.996473
1395	75		25		0.996473
1551			16	83	0.994512
1553	83	16			0.994512
1554		83	16		0.994512
1557	16	83			0.994512
1561	83			16	0.994512
1565		85		9	1.0
1566	80		9	9	1.0
1568	82	14			1.0
1570		4	95		0.997494
1572		12		87	1.0
1573			82	12	1.0
1574		14	85		1.0
1575	14		85		1.0
1836		14		85	0.993533
1860	66			25	1.0
1903		77		22	0.999999
1968	20		80		0.995493
1971	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain