SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene10293

Length: 710 nt

Origin of reads: Biogeco1 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene10293

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Serine-threonine protein kinase n=1 Tax=Triticum aestivum RepID=D2KHX1_WHEAT	-	-	3.0e-22	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Blast2go	calcium-dependent protein kinase	-	-	2.0652e-36	63%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	2.0652e-36	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	phosphorylation	GO:0016310	Biological Process	2.0652e-36	63%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	2.0652e-36	63%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	2.0652e-36	63%
Blast2go	protein binding	GO:0005515	Molecular Function	2.0652e-36	63%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
71	50		50		1.0
233	12			87	0.992554
281	85	14			0.993533
282	85	14			0.993533
284	85			14	0.993533
288		87		12	0.992554
289		87	12		0.992554
291	87		12		0.992554
292	87			12	0.992554
295	87	12			0.992554
300		10		90	0.90298
302	10	90			0.90298
304			10	90	0.90298
305	10		90		0.90298
307		10	90		0.90298
310	90	10			0.90298
312	10			90	0.90298
315	88	11			0.923564
316		11	88		0.923564
328		75	25		1.0
363		85		14	0.993533
500	33	66			0.997452
503	66			33	0.997452
504	66			33	0.997452
505	66			33	0.997452
506	66		33		0.997452
507	66	33			0.997452
510	66	33			0.997452
511	66			33	0.997452
512	66			33	0.997452
513			66	33	0.997452
525			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain