SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene10214

Length: 560 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene10214
ATCTGCAATGCAATTGAACCAAGAAAGTGAAGGAAGTACCAAACAGGAATTTCTCCATCCTATACTTCATACCGAATATGATAACTGCAACATGGGAAGTGGTGTACAGTCTGATCATGCGATACACGAAGGGGAAAGATTTCAGTGAAGGTTGGTTCGCACTGTGTTTCAGATTTATGGGAATTTTGTTACCGGGTATGTCTGCACACAGTCCCGTGAACTATGTGAATGCAATTAGAGTGGGTCACACAGACTTAACTGTTACAGACGAAGATTCAGACATCGATGGAATTGAAAGTCAATTAATTAATGGGGAAGGAAGGGACAACGGAAATGATTGATTGCTGGGAAGATAGGGATAGGAAAAAGTAAATAAGGCGTGGAATATCTGGTTGAACGCTACTCCTGTTGGTTGGTGGAAGAGTGGTAGCTTCTTTATTCCTTTGCCTTCAAATGTGCGCAGCCATGACAAGATTGTGAGGGATGCGTTTATTCTCCATTGACGAGACTTATCTAGACTTATCTATTAGTGATAATTTACTCTACCTTCCGCGCTTAGA

Ace file of the UniGene sp_v2.0_unigene10214

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	lipase [Ricinus communis]	-	-	4.0e-12	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Blast2go	feruloyl esterase a	-	-	5.6872e-24	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydrolase activity	GO:0016787	Molecular Function	5.6872e-24	68%

Source	InterPros	Term	Type	e value	Identity
Sma3	Lipase, class 3	IPR002921	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKB6

Fln msg: your sequence is shorter than subject: 113 - 492

Fln protein: LQCN*TKKVKEVPNRNFSILYFIPNMITATWEVVYSLIMRYTKGKDFSEGWFALCFRFMGILLPGMSAHSPVNYVNAIRVGHTDLTVTDEDSDIDGIESQLINGEGRDNGND*

Protein Length: 114

Fln nts: ATCTGCAATGCAATTGAACCAAGAAAGTGAAGGAAGTACCAAACAGGAATTTCTCCATCCTATACTTCATACCGAATATGATAACTGCAACATGGGAAGTGGTGTACAGTCTGATCATGCGATACACGAAGGGGAAAGATTTCAGTGAAGGTTGGTTCGCACTGTGTTTCAGATTTATGGGAATTTTGTTACCGGGTATGTCTGCACACAGTCCCGTGAACTATGTGAATGCAATTAGAGTGGGTCACACAGACTTAACTGTTACAGACGAAGATTCAGACATCGATGGAATTGAAAGTCAATTAATTAATGGGGAAGGAAGGGACAACGGAAATGATTGA___TTGCTGGGAAGATAGGGATAGGAAAAAGTAAATAAGGCGTGGAATATCTGGTTGAACGCTACTCCTGTTGGTTGGTGGAAGAGTGGTAGCTTCTTTATTCCTTTGCCTTCAAATGTGCGCAGCCATGACAAGATTGTGAGGGATGCGTTTATTCTCCATTGACGAGACTTATCTAGACTTATCTATTAGTGATAATTTACTCTACCTTCCGCGCTTAGA

Fln Alignment:

Contig10214___CN*TKKVKEVPNRNFSILYFIPNMITATWEVVYSLIMRYTKGKDFSEGWFALCFRFMGILLPGMSAHSPVNYVNAIRVGHTDLTVT
B8LKB6_______________CYNEKNLQEEPNRNFSLLHFIPIRITAVWELVQSLFLQYTKGREFKETKLSIFFRILGLMIPGVSAHSPVNYINAVRLGPSTLNPT

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
544		70	30		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain