SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene10200

Length: 654 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene10200 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	STYLOSA protein n=1 Tax=Antirrhinum majus RepID=Q6H976_ANTMA	-	-	5.0e-38	42%
FL-Next	sp=Transcriptional corepressor LEUNIG; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	40%
Blast2go	transcriptional corepressor leunig-like isoform 2	-	-	2.56438e-43	59%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	LisH dimerisation motif	IPR006594	-	-
Sma3	Single-stranded DNA-binding protein, SSDP	IPR007591	-	-
Sma3	LisH dimerisation motif, subgroup	IPR013720	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
392	11	88			0.923564
395			88	11	0.923564
396		88		11	0.923564
410	87		12		0.992554
524		75		25	0.996473
525		75		25	0.996473
529	75	25			0.996473
534	25	75			0.996473
537		66		33	0.997452
539		66		33	0.997452
543			66	33	0.997452
544			66	33	0.997452
546		33	66		0.997452
548			66	33	0.997452
549		33	66		0.997452
552	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain