SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene10195

Length: 1603 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene10195 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	syntaxin of plants 31 [Arabidopsis thaliana]	-	-	50%
FL-Next	sp=Syntaxin-31; Arabidopsis thaliana (Mouse-ear cress).	-	-	51%
Blast2go	syntaxin of plants 31	-	-	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular process	GO:0009987	Biological Process	0.0	68%
Blast2go	transport	GO:0006810	Biological Process	0.0	68%

Source	InterPros	Term	Type	Identity
Sma3	Target SNARE coiled-coil domain	IPR000727	-	-
Sma3	Syntaxin, N-terminal	IPR006011	-	-
Sma3	Syntaxin/epimorphin, conserved site	IPR006012	-	-
Sma3	Amino acid transporter, transmembrane	IPR013057	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	WIYLD domain	IPR018848	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9FFK1

Fln msg:

Fln protein: MAFSGSLASYRDRTSEFQSLTERLRKIQTPGSSSDSNGLGNSAKISQSAALVPSDFNKRASRIGLGIHEASQKIARLAKMAKKTSMFDDPAKEIEELTAVIKQDITALNAAFSDLQALQNSQVGDSNFSKDSAIHFTTIVDDLNNRLKGITKELKDVLVTRSENLKAHENRKQLFSSNASRGNPFAQQRGTGVSSGAVTDTKPPPWTNGSNFSASLPTSRVPLIDHSNVSQLRRRVGGDGATSIQMEGYMQQQMIQRQDSHMQSRATALQNVESTISELGNIFTQLATMVAHQGELAIRIDDNMDDTLANVEGAQGALLKHLSHISSNRWLIIKILFVLIIFMLIFIVFVA*

Protein Length: 353

Fln nts: CGTCGTGACCTTGGCTGTCACTCGCTTTAAATTATCCTTATTTTCATAATCAGCAGATGCTGATAAGGGAATTGCGCGAATTTTCAAGCCATACTCCATTCGAAGGTCCCATGCAGAGGTTATATGGAAGATAATTTGCCTAGCTAACTATAGTTCCGTTGGGGATCAGGACTGTAACAGGGGTTTCATTTACATAGTAC_-_ATGGCTTTTTCCGGATCTTTGGCATCCTATAGGGATCGGACATCCGAGTTCCAGTCATTGACAGAGAGATTGAGGAAGATTCAAACCCCTGGGAGTTCATCGGATAGCAATGGATTGGGAAATAGTGCGAAGATTTCTCAATCTGCAGCCCTTGTTCCATCGGATTTCAATAAGAGGGCTTCTAGAATCGGCCTTGGCATCCACGAGGCTTCTCAGAAGATTGCAAGACTTGCCAAGATGGCAAAGAAGACATCCATGTTTGATGACCCTGCCAAGGAAATAGAAGAACTTACTGCAGTTATTAAGCAAGATATCACAGCATTAAATGCTGCATTTTCAGACTTGCAAGCTCTTCAAAACTCTCAAGTAGGTGACAGTAACTTTTCCAAGGATAGTGCTATTCATTTCACAACAATTGTAGATGATTTGAACAACAGGCTCAAGGGCATTACAAAGGAATTGAAAGATGTTCTGGTTACAAGGTCTGAGAATCTTAAGGCTCACGAAAATAGGAAGCAGTTGTTCTCCTCAAATGCATCTAGAGGCAATCCTTTTGCTCAACAAAGAGGCACTGGTGTAAGTAGTGGTGCAGTAACAGATACAAAGCCACCTCCTTGGACAAATGGATCAAATTTTTCTGCCTCACTGCCTACATCAAGGGTTCCTTTGATCGATCATTCAAATGTTAGCCAACTGAGGCGTCGGGTTGGTGGAGATGGTGCTACATCTATCCAGATGGAAGGATACATGCAACAGCAGATGATTCAACGACAAGACAGTCATATGCAGTCTAGGGCAACTGCTCTCCAGAATGTTGAGTCAACAATCTCAGAACTTGGCAATATCTTTACACAGTTAGCCACAATGGTTGCTCACCAAGGGGAACTGGCTATCAGGATAGATGATAACATGGATGATACATTGGCTAATGTGGAAGGAGCACAGGGTGCTCTTTTAAAACACTTGAGTCATATTTCTTCAAATAGGTGGCTTATTATCAAGATTCTTTTTGTTCTTATAATTTTCATGCTAATATTTATTGTTTTTGTGGCGTAA___GGTCAAGAAATGAATAGAATGTTTTTTTAAAAGTTTTGAAATTGATTGGGTTTATCACCTTCTGTAATCTTCCAAGGGTAGAAATAGTTTTTGGTATAGAGGGATGGCTTTAGGCTAGTCTTTATTCTTCCAAATTATAATGTATTAACGTTGATTGCGGCCATTCTCTTGTATGAAGAACAATACTGAATTATTGGTCTTTGTTTGGCGTGGCCTAGTTAAACATTGGAGCCACATCTTGATTAACAATAACTTGTTCACCTAAAGGTTGCCCATGACCATGTGTTCTGACATTGGCATGTATTTCATCATTCATGATGTGTGTCCTCAATTGAACACCAAGAATC

Fln Alignment:

Contig10195___ASYRDRTSEFQSLTERLRKIQTPXXXXXXXXXXXSAKISQSAALVPSDFNKRASRIGLGIHEASQKIARLAKMAKKTSMFDDPAKEIEELTAVIKQDITALNAAFSDLQALQNSQVGDSNFSKDSAIHFTTIVDDLNNRLKGITKELKDVLVTRSENLKAHENRKQLFSSNASRGNPFAQQRGTGVSSGAVTDTKPPPWTNGSNFSASLPTSRVPLIDHSNV--SQLRRRVGGDGATSIQMEGYMQQQMIQRQDSHMQSRATALQNVESTISELGNIFTQLATMVAHQGELAIRIDDNMDDTLANVEGAQGALLKHLSHISSNRW
Q9FFK1_______________STFRDRTVELHSLSQTLKKIGAIPSVHQDEDDPASSKRSSPG----SEFNKKASRIGLGIKETSQKITRLAKLAKQSTIFNDRTVEIQELTVLIRNDITGLNMALSDLQTLQNMELADGNYSQDQVGHYTAVCDDLKTRLMGATKQLQDVLTTRSENMKAHENRKQLFSTKNAVDSP--------PQNNAKSVPEPPPWSSSSNPFGNLQQPLLPPLNTGAPPGSQLRRRSAIENAPSQQMEMSLLQQTVPKQENYSQSRAVALHSVESRITELSGIFPQLATMVTQQGELAIRIDDNMDESLVNVEGARSALLQHLTRISSNRW

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
59	10	90			0.90298
1412	28		71		1.0
1581		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain