SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene10175

Length: 1766 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene10175 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP synthase delta chain, chloroplastic n=1 Tax=Spinacia oleracea RepID=ATPD_SPIOL	-	-	1.96182e-44	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Blast2go	protein	-	-	0.0	70%

Source	GOs	Term	Type	Identity
Blast2go	defense response to bacterium	GO:0042742	Biological Process	70%
Blast2go	ATP synthesis coupled proton transport	GO:0015986	Biological Process	70%
Blast2go	photosynthetic electron transport in photosystem I	GO:0009773	Biological Process	70%
Blast2go	response to cold	GO:0009409	Biological Process	70%
Blast2go	photosynthetic electron transport in photosystem II	GO:0009772	Biological Process	70%
Blast2go	hydrogen ion transporting ATP synthase activity, rotational mechanism	GO:0046933	Molecular Function	70%
Blast2go	proton-transporting ATP synthase complex, catalytic core F(1)	GO:0045261	Cellular Component	70%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	70%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	70%
Blast2go	plastoglobule	GO:0010287	Cellular Component	70%
Blast2go	plasma membrane	GO:0005886	Cellular Component	70%
Blast2go	stromule	GO:0010319	Cellular Component	70%

Source	InterPros	Term	Type	e value	Identity
Sma3	ATPase, F1 complex, OSCP/delta subunit	IPR000711	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NTG2

Fln msg:

Fln protein: MDALKQSPVALNVQYASFARAVQKVGSGATSHRPLFKSSLIRVGLSRIANPLASKVPLVGSGNRGHIVMSDTTAGSYAEALAELAQSTNSLDLVNNDIEKLSRFLEYKELYSFLANPIITEERKKSIIKAIADDAKVQPTTLNFLYLLIDNRRMDIINDIIREFEMAYNKLTDTQLAVVTSVVNLENRHLAEIAKKVQSLTGAKNVRLKTVIDPSLIAGFNIRYGPTLSSIIDMSVKTELEQLASQIGYKERIENV*

Protein Length: 258

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTGATAACGACGACTCCCTGCCTGCCTGCCTTCCTGCCACTTCCACTTCCAGTCATGCTGTTTCAATCTTGTACGCGATAAGGATTGTGAGGCTCAAACCTTTCCAATTTCGATAAGTAGCACAATAATTTGTGTTACGGGGCCCGCGGATAACACAAGATAGACTCTGGCTTTAGAGCCGTCCTATCGTTTCACACTGTTGCATCCGAACGGTACGATCCCCTGCGATATTAAACTTGATATTTTCTCCACATCTTTGTGCTCCTCCTCGACCTGAAGCCTGCCACAGCAAATTTGAACTCCTGAGACGTCTCACTGCATCGATATCCGATATCCGAG_-_ATGGATGCTTTGAAGCAGTCCCCAGTTGCCCTAAATGTTCAATACGCATCATTCGCGAGAGCTGTTCAGAAGGTGGGAAGCGGAGCAACTTCTCACAGACCACTATTTAAATCTTCCCTTATAAGGGTAGGGTTGTCTAGGATCGCCAATCCCCTGGCTTCTAAAGTTCCTTTAGTGGGTAGTGGCAACAGAGGCCATATTGTAATGTCAGACACAACTGCAGGATCATATGCTGAAGCGCTTGCAGAGCTAGCTCAATCTACCAATTCACTAGATCTTGTCAATAATGATATTGAGAAGCTCTCTCGATTTCTAGAATACAAAGAGCTTTATAGCTTCCTCGCTAATCCGATAATCACGGAAGAGAGGAAGAAGAGCATTATCAAGGCCATTGCAGATGATGCCAAGGTTCAGCCTACCACGTTGAATTTCCTCTACCTCCTCATTGACAATAGAAGGATGGACATCATTAATGACATTATCAGAGAGTTCGAGATGGCCTACAATAAGCTGACTGACACACAGTTGGCAGTGGTGACTTCTGTTGTAAATCTTGAGAATCGACATCTGGCTGAAATTGCCAAGAAGGTCCAGAGTTTAACTGGTGCCAAGAATGTTAGACTAAAAACCGTCATTGATCCCTCTCTGATTGCAGGCTTCAACATCCGATATGGACCAACTCTGTCCAGTATTATAGACATGAGTGTGAAGACTGAGCTAGAGCAATTGGCGAGTCAAATTGGGTACAAAGAGAGAATTGAAAATGTATGA___ATCTGAGATGTTTGTGTATCCTTGACAAAAAAAATGAATCCATTGGTTTTCGTTGTTCTAAGTACTATTTATTTGCTAGAATTGTTTCTGAACTGGCTTGCAGAAGTGTCTGAGGCTATAGTTCTTGTTATCGCGTTGTTTCCATTTGAATTTTATTACCCTGCACCTGACATTTGGATTGGAAAATGCTATCAAATTTTATGAGTTGGAAGGCACCCACTACCTACTTTGATTGCAGACTTGGAGGGCTCGCTTACAAAAAAAAATTAAGGACAAAAAAAAGTGTCAAGTAAGTTGAAGGTCATTGTTGGATGAAATATATGGAAGAGATACATAGACCAGGGGTATAGATCTGCACATGCCTTCATTATCTAGATTATTAATTCATGTTCATTTGAAAATACTTCATGCAAAAATCATGAGCTGAGTTCAGGTTGTTGGTACTGTGGATTTGTATGCAAAAATCATGAGCTGAGTTCAGGTTGTTGGTACTGTGGATTTGTATGGACTTGGCCTTCTAAGTTGTTTCTGCTGGGACATTTTGGATTGTTCTACTGTGTATTCTCTGGACTGATTGTATTTCCTAAGATTCAATGGCCAAAAACATGTAGCCATATGGCTTCATTTTTTT

Fln Alignment:

Contig10175___MDALKQSPVALNVQYASFARAVQKVGSGATSHRPLFKSSLIRVGLSRIANPLASKVPLVGSGNRGHIVMSDTTAGSYAEALAELAQSTNSLDLVNNDIEKLSRFLEYKELYSFLANPIITEERKKSIIKAIADDAKVQPTTLNFLYLLXXXXXXXXXXXXXREFEMAYNKLTDTQLAVVTSVVNLENRHLAEIAKKVQSLTGAKNVRLKTVIDPSLIAGFNIRYGPTLSSIIDMSVKTELEQLASQIGYKERIENV
A9NTG2_______________MDALKQSPMALNVQCAPFVKAVQKVGSGASSHRPSFKSSLIRIGLSRTPNPLASKVPLVGSGHRAHVVMADTTAGSYAEALAGLAQSTKSLDIVNNDIDKLSRFIAYKEFYSFLANPIIKEEKKKSIIKAIADDAKFQPSTLNFLYLLIDNKRMDLIGDIVKEFELAYNKLTDIQLAVVTSVVNLENRHLAEIAKKVQSLTGAKNVRLKTVIDPSLIAGFTIRYGPTGSNIIDMSVKTELEKLASQIGYKERIENV

SNPs (tot: 56)

Position	A %	C %	G %	T %	Probability
357	12			75	0.975346
358	12			87	0.992554
359			12	87	0.992554
360			12	87	0.992554
362		14		85	0.993533
363	14			85	0.993533
364		14		85	0.993533
366	14			85	0.993533
368		85	14		0.993533
501	90		10		0.90298
929	90	6			0.997544
1190			96	3	0.99245
1279		90		3	0.997544
1446	82	17			1.0
1480		10	89		0.999919
1481	89	10			0.999919
1482		10	89		0.999919
1483		10	89		0.999919
1485			88	11	0.999937
1486		12	87		0.999964
1487	87	12			0.999964
1488		12	87		0.999964
1490	62	37			1.0
1491		86		13	0.999973
1492	53	46			1.0
1493	69	30			1.0
1494	84			15	0.999986
1495			63	36	1.0
1507	85		14		0.993533
1571	12		87		0.992554
1572		87		12	0.992554
1580		85		14	0.993533
1581		85	14		0.993533
1584	85			14	0.993533
1586	14			85	0.993533
1590			14	85	0.993533
1592		14		85	0.993533
1593	14			85	0.993533
1594	14		71		0.984337
1595		14	14	71	0.984337
1596		14	85		0.993533
1597		14		85	0.993533
1598		28		71	1.0
1600			14	85	0.993533
1601	16	83			0.994512
1713	16		83		0.994512
1714		60		40	1.0
1717		40	60		1.0
1719	80	20			0.995493
1720	80	20			0.995493
1721		20	80		0.995493
1722	20		80		0.995493
1724		80		20	0.995493
1726		25	75		0.996473
1728	25	75			0.996473
1729	75	25			0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
1711	1725	AGGC AGGC AGGC AGG	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain